View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18629_high_5 (Length: 493)
Name: NF18629_high_5
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18629_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 36 - 482
Target Start/End: Complemental strand, 24320775 - 24320331
Alignment:
| Q |
36 |
tttcttttttcttgtgattccatcatataagtataacccacatgttgctttgacactataggcaaattctatattatatcactt-----tgataggtgca |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24320775 |
tttcttttttcttgtgattccatcatataa------cccacatgttgctttgacactataggcaaattctatattatatcacttagctttgataggtgca |
24320682 |
T |
|
| Q |
131 |
tgggagtgccgtatacttggctcgtacctaaaaatcgactgaaaccttgttaacaccaaacatatatttatcttttgaaagtagaagatcatagttctca |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24320681 |
tgggagtgccgtatacttggctcgtacctaaaaatcgactgaaaccttgttaacaccaaacatatatttatcttttgaaagtagaagatcgtagttctca |
24320582 |
T |
|
| Q |
231 |
gttttcccagttgagaggtgatcactgttgacaaagttaagaggaaaccaatataagtgcataagactcacctattaccc-ttaatttttcctcatttct |
329 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
24320581 |
gttttcccagttgagaggtga-------tgacaaagtcaagaggaaacgaatataagtgcataagactcatctattacccattaatttttcctcatttcg |
24320489 |
T |
|
| Q |
330 |
atcgaatcgacgtttcagtcataaagatcaa-----aaacgtgaacttctacttttaagaaacattatcaatcgatgttttaggtgatttttaagtacca |
424 |
Q |
| |
|
||| ||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
24320488 |
atctaatcgacgtttcaatcataaagatcaagaaggacacgtgaacttctacttttaagaaacattgtcaatcgatattttaggtgatttttaagtacca |
24320389 |
T |
|
| Q |
425 |
aaccaccatcgaccaccaatcaggatggtccgcttcaaaacccatcttactctatatt |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24320388 |
aaccaccatcgaccaccaatcaggatggtccgcttgaaaacccatcttactctatatt |
24320331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 24320844 - 24320795
Alignment:
| Q |
16 |
catgtgcaagagtagtggagtttcttttttcttgtgattccatcatataa |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24320844 |
catgtgcaagagtagtggagtttcttttttcttgtgattccatcatataa |
24320795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University