View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18629_low_12 (Length: 373)
Name: NF18629_low_12
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18629_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 69 - 326
Target Start/End: Complemental strand, 48531858 - 48531600
Alignment:
| Q |
69 |
aaacatgtttgacttgaaaaaggactgcaaattatgttcattctagtcttgtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgt |
168 |
Q |
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| T |
48531858 |
aaacatgtttgacttgaaaaaggactgcaaattatgttcattctagtcttgtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgt |
48531759 |
T |
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| Q |
169 |
gccagattcttggtaacatatgatttgtatcatctaagactttgagcagacaaacctgttcacctatcacgtcttgtttgcaagagc-gttgtatttatg |
267 |
Q |
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| T |
48531758 |
gccatattcttggtaacaaatgatttgtatcatataagactttgagcagacaaacctgttcacctatcacgtcttgtttgcaagagcatttgtatttatg |
48531659 |
T |
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| Q |
268 |
agatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagtgttgttggt |
326 |
Q |
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| T |
48531658 |
agatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagtggtgttggt |
48531600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 48529156 - 48528882
Alignment:
| Q |
10 |
aatatatatgtcaatgtttaaaatactttctatttgataaattactttgccaataacagaaacatgtttgacttgaaaaaggactgcaaattatgtt-ca |
108 |
Q |
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| T |
48529156 |
aatatatatgtcaatgtttgaaatactttctatttgataaattactttgccaataacaaaaacatgtttgacttgaaaaagggctgcaaattatgtttca |
48529057 |
T |
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| Q |
109 |
ttctagtcttgtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgtgccagattcttggtaacatatgatttgtatcatctaagac |
208 |
Q |
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| T |
48529056 |
ttctagtcttgtaattgtatatgtttggtgtttagttgtatttaaaaagcatgttggtgtgccatattctaggtaacaaatgatttgtatcatctaagac |
48528957 |
T |
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| Q |
209 |
tttgagcagacaaacctgttcacctatcacgtcttgtttgcaagagcgttgtatttatgagatatgagaagctaa |
283 |
Q |
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| T |
48528956 |
tttgagcagacagaactgttcacctatcacgtcttgtttgcaagagcattgtatttatgagatatgagaagctaa |
48528882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 48532020 - 48531969
Alignment:
| Q |
10 |
aatatatatgtcaatgtttaaaatactttctatttgataaattactttgcca |
61 |
Q |
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| T |
48532020 |
aatatatatgtcaatgtttaaaatactttctatttgataaattactttgcca |
48531969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 5341793 - 5341724
Alignment:
| Q |
281 |
taagagaaaacaaccttgaatgagattgagaggaagtgttgttggtgatgtgagagtgagtgtaagggtt |
350 |
Q |
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| T |
5341793 |
taagagaaaacgaccttgaaagagaatgagaggaagtgatgttggtgatgtgagagtgagtctgagggtt |
5341724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 38542725 - 38542786
Alignment:
| Q |
281 |
taagagaaaacaaccttgaatgagattgagaggaagtgttgttggtgatgtgagagtgagtg |
342 |
Q |
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| T |
38542725 |
taagagaaaacaactttgaaagaaagtgagaggaaatgatgttggtgatgtgagaatgagtg |
38542786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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