View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18629_low_14 (Length: 360)
Name: NF18629_low_14
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18629_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 40566465 - 40566119
Alignment:
| Q |
1 |
aatcgccgagagtgctccaatcgtgtcacagccaactgctgtcaacttgtttcgagttggagagatgtaaaaatgtgtcatgttcatatcccgcagcgtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40566465 |
aatcgccgagagtgctccaatcgtgtcacagccaactgctgtcaacttgtttcgagttggcgagatgtaaaaatgtgtcatgttcatatcccgcagcgtt |
40566366 |
T |
|
| Q |
101 |
tggtatacgaatctgcccttttctgcgtagcaatcgctggctactggccatgcgacgtgcaattcaccattgagtgagatatttaggacattttgattac |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40566365 |
tggtatatgaatctgcccttttctgcgtagcaatcgctggctactggccatgcaacgtgcaattcaccattgagtgagatatttaggacattttgattac |
40566266 |
T |
|
| Q |
201 |
tcttatccaagtagggaacatgtgttgaggttggagttgaagatgttttgttgcaattaatgagaaaggtattgtcgagggaacaattcttggtggttcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40566265 |
tcttatccaagtagggaacatgtgttgaggttggagttgaagatgttttgttgcaattaatgagaaaggtattgtcgagggaacaattcttagtggttcc |
40566166 |
T |
|
| Q |
301 |
aaatggaaagggaatggtgacggaaccacattttgttgggcaatttg |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40566165 |
aaatggaaagggaatggtgacggaaccacattttgttgggcaatttg |
40566119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 321
Target Start/End: Complemental strand, 40577551 - 40577261
Alignment:
| Q |
22 |
cgtgtcacagccaactgctgtcaacttgtttcgagttggagagatgtaaaaatgtgtcatgttcatatcccgcagcgtttggtatacgaatctgcccttt |
121 |
Q |
| |
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||||||||| ||||||||| | ||||||||| |||||| |||||| ||||||||||| ||| || ||| | | ||||||| ||| | |||| ||| |
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| T |
40577551 |
cgtgtcacaaccaactgctataaacttgttttgagttg---agatgtgaaaatgtgtcacgttgatttcctgaaatgtttggtttacttgtgtgccattt |
40577455 |
T |
|
| Q |
122 |
tctgcgtagcaatcgctggctactggccatgcgacgtgcaattcaccattgagtgagatatttaggacattttgattactcttatccaagtagggaacat |
221 |
Q |
| |
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| || ||||||| |||||||||||||||||| ||||| | ||||||||| |||||||| ||||| ||| |||||||| ||| |||| | || || | |
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| T |
40577454 |
tttgaatagcaatagctggctactggccatgcaacgtgaagttcaccattaagtgagatgtttagaacactttgattagtctgtggcaagaatggtacct |
40577355 |
T |
|
| Q |
222 |
gtgttgaggttggagttgaagatgttttgttgcaattaatgagaaaggtattgtcgagggaacaattcttggtggttccaaatggaaagggaatggtgac |
321 |
Q |
| |
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||||||||||| |||||||||||||||||| ||||||||||| ||||| || ||||||| |||||||||||||||||| |||||||| ||||| |
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| T |
40577354 |
ctgttgaggttg------aagatgttttgttgcaatcgatgagaaaggtgttgtctagagaacaatccttggtggttccaaatgggaagggaatagtgac |
40577261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 347
Target Start/End: Complemental strand, 40571131 - 40570812
Alignment:
| Q |
22 |
cgtgtcacagccaactgctgtcaacttgtttcgagttggagagatgtaaaaatgtgtcatgttcatatcccgcagcgtttggtatacgaatctgcccttt |
121 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| |||||| ||||||| ||||||||||||||| |||||| | | ||||| | | | || ||| |
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| T |
40571131 |
cgtgtcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgtgtcatgttgatatcctgaattatttggctcaattttgtaccattt |
40571032 |
T |
|
| Q |
122 |
tctgcgtagcaatcgctggctactggccatgcgacgtgcaattcaccattgagtgagatatttaggacattttgattactcttatccaagtagggaacat |
221 |
Q |
| |
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|||| |||||||| || |||||||||||||| | ||| |||||| | ||||||||| ||||| ||| |||||||| ||| |||| | || || | |
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| T |
40571031 |
tctgaatagcaatcacttgctactggccatgcagcacgcagttcaccgtcgagtgagatgtttagaacactttgattagtctgtggcaagaatggtacgt |
40570932 |
T |
|
| Q |
222 |
gtgttgaggttggagttgaagatgttttgttgcaattaatgagaaaggtattgtcgagggaacaattcttggtggttccaaatggaaagggaatggtgac |
321 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||| ||||| || |||||||| ||||||||||||||||| |||||||| ||||| |
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| T |
40570931 |
ctgttgaggttg------aagatgttttgttgcaatcaatgagaaaggtgttgtctagagaacaattattggtggttccaaatgggaagggaatagtgac |
40570838 |
T |
|
| Q |
322 |
ggaaccacattttgttgggcaatttg |
347 |
Q |
| |
|
||||| |||||||| ||||||| |
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|
| T |
40570837 |
attgccacactttgttggacaatttg |
40570812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 337
Target Start/End: Complemental strand, 40600359 - 40600156
Alignment:
| Q |
137 |
ctggctactggccatgcgacgtgcaattcaccattgagtgagatatttaggacattttgattactcttatccaagtagggaacatgtgttgagg---ttg |
233 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| | || ||||| | || | ||||| || ||| |
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|
| T |
40600359 |
ctggctactggccatgcgacacgcaattcaccattgagtgagatatttaggaccctttggttagtgtttgccaagaaaggtttgtatgttgtggattttg |
40600260 |
T |
|
| Q |
234 |
gagttgaagatgttttgttgcaattaatgagaaaggtattgtcgagggaacaattcttggtggttccaaatggaaagggaatggtgacggaaccacattt |
333 |
Q |
| |
|
| ||||||||||| |||| |||| |||||| || || ||||||||||||||| || ||| |||||||||||||||| |||||||| ||||||||||| |
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|
| T |
40600259 |
gtgttgaagatgtattgtagcaactaatgatgaacttactgtcgagggaacaatcttttgtgattccaaatggaaagggtatggtgacagaaccacattt |
40600160 |
T |
|
| Q |
334 |
tgtt |
337 |
Q |
| |
|
|||| |
|
|
| T |
40600159 |
tgtt |
40600156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 40589416 - 40589358
Alignment:
| Q |
26 |
tcacagccaactgctgtcaacttgtttcgagttggagagatgtaaaaatgtgtcatgtt |
84 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||| || ||||||||||||||| |
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|
| T |
40589416 |
tcacagccaactgctaccaacttgtttcgagtgggagagaggtgaaaatgtgtcatgtt |
40589358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 40595727 - 40595656
Alignment:
| Q |
128 |
tagcaatcgctggctactggccatgcgacgtgcaattcaccattgagtgagatatttaggacattttgatta |
199 |
Q |
| |
|
||||||| ||||||||||||||||| || |||| ||||||||| ||||| ||||||| |||| ||||||| |
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|
| T |
40595727 |
tagcaatgtctggctactggccatgcaacatgcagttcaccattaagtgatatatttaagacacgttgatta |
40595656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 40595823 - 40595756
Alignment:
| Q |
23 |
gtgtcacagccaactgctgtcaacttgtttcgagttggagagatgtaaaaatgtgtcatgttcatatc |
90 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||||||| |||| || |||||||| ||| || ||||| |
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|
| T |
40595823 |
gtgtcacatccaactgctatcaacttgttttgagttggcgagacgtgaaaatgtggcatcttgatatc |
40595756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 335
Target Start/End: Complemental strand, 40595607 - 40595514
Alignment:
| Q |
242 |
gatgttttgttgcaattaatgagaaaggtattgtcgagggaacaattcttggtggttccaaatggaaagggaatggtgacggaaccacattttg |
335 |
Q |
| |
|
||||||||||||||||| ||||| || | ||||| ||||| |||| |||||| |||||||||| ||||| || ||| ||||||||| |||| |
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|
| T |
40595607 |
gatgttttgttgcaattgatgaggaaagcgttgtctagggagcaatctttggtgattccaaatgggaaggggattttgatggaaccacactttg |
40595514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 23 - 339
Target Start/End: Complemental strand, 8490797 - 8490487
Alignment:
| Q |
23 |
gtgtcacagccaactgctgtcaacttgtttcgagttggagagatgtaaaaatgtgtcatgttcatatcccgcagcgtttggtatacgaatctgccctttt |
122 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| ||||| ||||| | || |||||||||||| || | | ||||||| || | | | ||||||| |
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|
| T |
8490797 |
gtgtcacaaccaactgctatcaacttgtttccggttggtgagatttgaagatgtgtcatgttgatgccaggatatgtttggttcaccagtttaccctttt |
8490698 |
T |
|
| Q |
123 |
ctgcgtagcaatcgctggctactggccatgcgacgtgcaattcaccattgagtgagatatttaggacattttgattactcttatccaagtagggaacatg |
222 |
Q |
| |
|
| || |||||||| ||| ||| ||||||||| || |||| |||||||| ||||||||| ||||| ||| |||||||||||| |||| | || || | |
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|
| T |
8490697 |
cagcatagcaatcactgcctattggccatgcaacatgcagttcaccatcgagtgagatgtttagaacactttgattactctgtggcaagaatggtacgtc |
8490598 |
T |
|
| Q |
223 |
tgttgaggttggagttgaagatgttttgttgcaattaatgagaaaggtattgtcgagggaacaattcttggtggttccaaatggaaagggaatggtgacg |
322 |
Q |
| |
|
||||||||||| |||| ||||||||||||| |||||||||||| ||||| || |||||| ||||||||||||||||||| |||||||| ||||| |
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|
| T |
8490597 |
tgttgaggttg------aagacgttttgttgcaatcaatgagaaaggtgttgtctagagaacaactcttggtggttccaaatgggaagggaatagtgaca |
8490504 |
T |
|
| Q |
323 |
gaaccacattttgttgg |
339 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
8490503 |
gagccacactttgttgg |
8490487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 239 - 347
Target Start/End: Original strand, 2017453 - 2017561
Alignment:
| Q |
239 |
gaagatgttttgttgcaattaatgagaaaggtattgtcgagggaacaattcttggtggttccaaatggaaagggaatggtgacggaaccacattttgttg |
338 |
Q |
| |
|
||||||| |||| ||||||| |||||||| || ||||| | |||||||| ||||||||||||||||||||||||||| ||||| || ||||| ||||||| |
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|
| T |
2017453 |
gaagatgctttggtgcaatttatgagaaaagtgttgtccaaggaacaatccttggtggttccaaatggaaagggaattgtgacagagccacactttgttg |
2017552 |
T |
|
| Q |
339 |
ggcaatttg |
347 |
Q |
| |
|
||| |||| |
|
|
| T |
2017553 |
tgcagtttg |
2017561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 2017334 - 2017407
Alignment:
| Q |
126 |
cgtagcaatcgctggctactggccatgcgacgtgcaattcaccattgagtgagatatttaggacattttgatta |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||| |||||||| || ||||| ||||||||| |||||||| |
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|
| T |
2017334 |
cgtagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgatta |
2017407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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