View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18629_low_2 (Length: 936)
Name: NF18629_low_2
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18629_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 880; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 880; E-Value: 0
Query Start/End: Original strand, 18 - 917
Target Start/End: Complemental strand, 44068407 - 44067508
Alignment:
| Q |
18 |
atggctagtatgagtagaaatggcaagtaaactaggccattggcaatagcataagatgaaactctgtagcttccacttgaagtctccttcattagaatct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44068407 |
atggctagtatgagtagaaatggcaagtaaactaggccattggcaatagcataagatgaaactctgtagcttccacttgaagtctccttcattagaatct |
44068308 |
T |
|
| Q |
118 |
ccctttcttgtagaaaaatcggtagagcttcaatggcactcgataacaaaaacgttaaaatgaaagcaaatagaccaaccctttgttctgctcccactag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44068307 |
ccctttcttgtagaaaaatcggtagagcttcaatggcactcgataacaaaaacgttaaaatgaaagcaaatagaccaaccctttgttctgctcccacgag |
44068208 |
T |
|
| Q |
218 |
accatctttgagattaccaaagatggatcctaaaaccagccctgaaatcagcatctgaatagtcctaaatgcaaagagctcctttgtacggaaaatattt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44068207 |
accatctttgagattaccaaagatggatcctaaaaccagccctgaaatcagcatctgaatagtcctaaatgcaaagagctcctttgtacggaaaatattt |
44068108 |
T |
|
| Q |
318 |
tttgagaacctatgagctagaatcatagtttctctcaatctagaattcgcataatcactagtgaaatccattcctacattcatgttttctatgtcaaata |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44068107 |
tttgagaacctatgagctagaatcatagtttctctcaatctagaattcgcataatcactagtgaaatccattcctacattcatgttttctatgtcaaata |
44068008 |
T |
|
| Q |
418 |
ccttggattgttgaaatagctgttgcagagtaaacttaccgcttctactttcaccttgatcattgcctttctttagtagcattgtccctagtaatcgttt |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44068007 |
ccttggattgttgaaatagctgttgcagagtaaacttaccgcttctactttcaccttgatcattgcctttctttagtagcattgtcccttgtaatcgttt |
44067908 |
T |
|
| Q |
518 |
cggtggttcgatcagaacttgctgactcttttgttgttcctgaatagtctcaatggattcaatagcaaactcaacaatgttgacatgaagaggaagctct |
617 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44067907 |
cggtggttcgatctgaacttgctgactcttttgttgttcctgaatagtctcaatggattcaatagcaaactcaacaatgttgacatgaagaggaagctct |
44067808 |
T |
|
| Q |
618 |
aaacccatcaacctcagattcacatccaacaaatccgcagttccatgatgtaacacactgccattcgccaacaacagtattgaattcaacaacttcacta |
717 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44067807 |
aaacccatcaacctcagattcacatccaacaaatctgcagttccatgatgtaacacactgccattcaccaacaacagtattgaattcaacaacttcacta |
44067708 |
T |
|
| Q |
718 |
tccggaacccgggttgatgaatacttagtattatagttcttcccctagattcagccatgactttcagcatatcaattatttgcagagctgaggtactgtc |
817 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44067707 |
tccggaacccgggttgatgaatacttagtattatagttcttcccctagattcagccatgactttcagcatatcaattatttgcagagctgaggtactgtc |
44067608 |
T |
|
| Q |
818 |
aagacctgaagttgcttcatcaagaatcaacacttttggatcatgtatgacttcaacaccaatggaaacacggcgcctctcaccaccggatattccgcgg |
917 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44067607 |
aagacctgaagttgcttcatcaagaatcaacacttttggatcatgtatgacttcaacaccaatggaaacacggcgcctctcaccaccggatattccgcgg |
44067508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 9e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 39264689 - 39264333
Alignment:
| Q |
18 |
atggctagtatgagtagaaatggcaagtaaactaggccattggcaatagcataagatgaaactctgtagcttccacttgaagtctccttcattagaatct |
117 |
Q |
| |
|
|||||||| || || ||||||||||||||||||| |||||| ||||||||||||||||| || | ||||||||||| || || |||||||| ||||| | |
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| T |
39264689 |
atggctaggattagaagaaatggcaagtaaactaagccatttgcaatagcataagatgatacgcggtagcttccacaagatgtttccttcatgagaattt |
39264590 |
T |
|
| Q |
118 |
ccctttcttgtagaaaaatcggtagagcttcaatggcactcgataacaaaaacgttaaaatgaaagcaaatagaccaaccctttgttctgctcccactag |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| || ||||||| ||| ||||| ||||||||||||||||||||||||| || || ||| ||| |
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| T |
39264589 |
ccctttcttgtagaaaaattggtagagcttctatgctgcttgataacagaaaagttaatatgaaagcaaatagaccaaccctttcttgtgttcctcttag |
39264490 |
T |
|
| Q |
218 |
accatctttgagattaccaaagatggatcctaaaaccagccctgaaatcagcatctgaatagtcctaaatgcaaagagctcctttgtacggaaaatattt |
317 |
Q |
| |
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| |||||||||| |||| |||||||||||||||||| || |||||||||||||||||||| ||||| ||||||| ||||| |||||||| || || ||| |
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| T |
39264489 |
atcatctttgaggttacaaaagatggatcctaaaactagtcctgaaatcagcatctgaattgtcctgcatgcaaatagctcttttgtacgaaatatgttt |
39264390 |
T |
|
| Q |
318 |
tttgagaacctatgagctagaatcatagtttctctcaatctagaattcgcataatca |
374 |
Q |
| |
|
|| ||||| ||||||| |||||||||||||||||||||||| ||||| ||| ||||| |
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|
| T |
39264389 |
ttggagaatctatgagttagaatcatagtttctctcaatctggaattagcaaaatca |
39264333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 567 - 886
Target Start/End: Complemental strand, 39264125 - 39263806
Alignment:
| Q |
567 |
tcaatggattcaatagcaaactcaacaatgttgacatgaagaggaagctctaaacccatcaacctcagattcacatccaacaaatccgcagttccatgat |
666 |
Q |
| |
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|||||||| ||||||||||| ||||| | || ||||||||||||||||||| ||||||||| |||| ||||||| || ||||| ||||||||||||| |
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| T |
39264125 |
tcaatggaatcaatagcaaattcaactacattaacatgaagaggaagctctagacccatcaatctcaaattcacactcagtaaatcagcagttccatgat |
39264026 |
T |
|
| Q |
667 |
gtaacacactgccattcgccaacaacagtattgaattcaacaacttcactatccggaacccgggttgatgaatacttagtattatagttcttcccctaga |
766 |
Q |
| |
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|||||||| ||||| || ||||||| | |||||| |||| ||||||||| | ||| || |||||||||||||||||||||||||||||||| |||| |
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| T |
39264025 |
gtaacacagaaccattagctaacaacaacaatgaattgaacagcttcactattctgaaacctggttgatgaatacttagtattatagttcttcctctagt |
39263926 |
T |
|
| Q |
767 |
ttcagccatgactttcagcatatcaattatttgcagagctgaggtactgtcaagacctgaagttgcttcatcaagaatcaacacttttggatcatgtatg |
866 |
Q |
| |
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||||||||| || || ||||| ||||| ||||||| |||||| ||||| ||||| |||||||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
39263925 |
ttcagccataaccttaagcatgtcaataatttgcaaagctgaagtactatcaagccctgaagttggttcatcaagaatcaaaacttttggatcatgtatg |
39263826 |
T |
|
| Q |
867 |
acttcaacaccaatggaaac |
886 |
Q |
| |
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|||||||||||||| ||||| |
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|
| T |
39263825 |
acttcaacaccaatagaaac |
39263806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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