View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18629_low_20 (Length: 260)
Name: NF18629_low_20
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18629_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 36397047 - 36396815
Alignment:
| Q |
17 |
ttaactttaccctcttttctatcaggcctttcatcattaattgaattggatttaagctattgcaatctcactgataattcaattcctcatggtattgatt |
116 |
Q |
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| T |
36397047 |
ttaactttgcccccttttctatcgggcctttcctcattaactgaattagatttaagcgattgcaatctcaccgatagttcaattcctcacgatattgatt |
36396948 |
T |
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| Q |
117 |
gcttatcatcattggagagactatttctaagtgggaacaattttgtacgcctacccactcaccacctcgctaatctttcaaagcttcattatcttgaatt |
216 |
Q |
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| T |
36396947 |
gcttatcgtcattggagagactaatccttagtgggaataattttgtatgcctacccactcaccacctcgctaatctttcaaagcttcattatcttgaatt |
36396848 |
T |
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| Q |
217 |
agaagattgcccacaacttcaatctttacctat |
249 |
Q |
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| T |
36396847 |
agaagatttcccacaacttcaatctttacctat |
36396815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 36405608 - 36405373
Alignment:
| Q |
17 |
ttaactttaccctcttttctatcaggcctttcatcattaattgaattggatttaagctattgcaatctcactgataattcaattcctcatggtattgatt |
116 |
Q |
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|||||||| ||| |||||||||| |||||||| ||||||| |||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||||| |
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| T |
36405608 |
ttaactttgcccccttttctatcgggcctttcctcattaactgaattagatttaagcgattgcaatctcaccgatagttcaattcctcacgatattgatt |
36405509 |
T |
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| Q |
117 |
gcttatcatcattggagagactatttctaagtgggaacaattttgtacgcctacccactcaccacctcgctaatctttcaaagcttcattatcttgaatt |
216 |
Q |
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| T |
36405508 |
gcttatcatcattggagagactaatccttagtgggaataattttgtatgcctgccaactcactacatttctaatctttcaaagcttcgttatcttgaatt |
36405409 |
T |
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| Q |
217 |
agaagattgcccacaacttcaatctttacctatgct |
252 |
Q |
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| T |
36405408 |
ggaagattgtccacagcttcaatctttaccaatgct |
36405373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 36389149 - 36389011
Alignment:
| Q |
38 |
tcaggcctttcatcattaattgaattggatttaagctattgcaatctcactgataattcaattcctcatggtattgattgcttatcatcattggagagac |
137 |
Q |
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||||| ||||| ||||||| || |||||||| ||| ||||||||||||||||| |||||||||| | | |||| || | ||||||||||||||||||| |
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| T |
36389149 |
tcaggtctttcctcattaactgttttggatttgagcaattgcaatctcactgatgattcaattccccgttatattaatggtttatcatcattggagagac |
36389050 |
T |
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| Q |
138 |
tatttctaagtgggaacaattttgtacgcctacccactc |
176 |
Q |
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| T |
36389049 |
taattctatccgggaataattttatagacctacccactc |
36389011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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