View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18629_low_21 (Length: 256)
Name: NF18629_low_21
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18629_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 4181046 - 4180823
Alignment:
| Q |
17 |
tactatagaaaacaaacagcttggtaactaggaccacttattcagtacatatatatagttcataactctcatttcatagtttagaaatgagtgttatctt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
4181046 |
tactatagaaaacaaacagcttggtaactaggaccacctattcagtacatatatatagttcaaaactctcatttcatactttagaaatgagtgttatctt |
4180947 |
T |
|
| Q |
117 |
cttttggagggtggtgaggatgcttttttggaatgttggtactggcagggtaagttggtttgggtaaggtggtaggatgtacatatgttgatggtggatg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4180946 |
cttttggagggtggtgaggatgcttttttggaatgttggtactggcagggtaaattggtttgggtaaggtggtaggatgtacatatgttgatggtggatg |
4180847 |
T |
|
| Q |
217 |
atgtaaatgtttattatggttagg |
240 |
Q |
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||||||||||||||||||| |||| |
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| T |
4180846 |
atgtaaatgtttattatggctagg |
4180823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 4177215 - 4176997
Alignment:
| Q |
20 |
tatagaaaacaaacagcttggtaactaggaccacttattcagtacatatatatagttcataactctcatttcatagtttagaaatgagtgttatcttctt |
119 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4177215 |
tatagaaaacaaacagcttggtaactagaaccacttattcagtacatatatat--ttcataactctcatttcatactttagaaatgagtgttatcttctt |
4177118 |
T |
|
| Q |
120 |
ttggagggtggtgaggatgcttttttggaatgttggtactggcagggtaagttggtttgggtaaggtggtaggatgtacatatgttgatggtggatgatg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4177117 |
ttggagggtggtgaggatgcttttttggaatgttggtactggcagggtaagttggtttgggtaaggtggtaggatgtacatatgttgatgatggatgatg |
4177018 |
T |
|
| Q |
220 |
taaatgtttattatggttagg |
240 |
Q |
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||||||||||||||||||||| |
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| T |
4177017 |
taaatgtttattatggttagg |
4176997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 4638445 - 4638564
Alignment:
| Q |
17 |
tactatagaaaacaaacagcttggtaactaggaccacttattcagtacatatatatagttcataactctcatttcatagtttagaaatgagtgttatctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4638445 |
tactatagaaaacaaacagcttggtaactaggaccacttattcagtacatatacat--ttcataactctcatttcatagtttagaaatgagtgttatctt |
4638542 |
T |
|
| Q |
117 |
cttttggagggtggtgaggatg |
138 |
Q |
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|||||||||||||||||||||| |
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| T |
4638543 |
cttttggagggtggtgaggatg |
4638564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 4762848 - 4762967
Alignment:
| Q |
17 |
tactatagaaaacaaacagcttggtaactaggaccacttattcagtacatatatatagttcataactctcatttcatagtttagaaatgagtgttatctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
4762848 |
tactatagaaaacaaacagcttggtaactaggaccacttattcagtacatatacat--ttcataactctcatttcatactttagaaatgattgttatctt |
4762945 |
T |
|
| Q |
117 |
cttttggagggtggtgaggatg |
138 |
Q |
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|||||||||||||||||||||| |
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| T |
4762946 |
cttttggagggtggtgaggatg |
4762967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 4808896 - 4808960
Alignment:
| Q |
17 |
tactatagaaaacaaacagcttggtaactaggaccacttattcagtacatatatatagttcataa |
81 |
Q |
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||||| ||||||||||||||| ||||||| ||||| ||||||| || | ||||||||||||||| |
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| T |
4808896 |
tactacagaaaacaaacagctccgtaactaagaccaattattcaatatagatatatagttcataa |
4808960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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