View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18629_low_22 (Length: 240)
Name: NF18629_low_22
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18629_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 3983465 - 3983233
Alignment:
| Q |
1 |
ccgctaatccaacctgtcagaaaattcagttgatttgatccaagttaggcactataaattcatttatttaacttgaaccagttctttaatacctttgaag |
100 |
Q |
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| T |
3983465 |
ccgctaatccaacctgtcagaaaattcagttgatttgatccaagttaggcactataaattcatttatttaacttgaaccagttctttaataccttagaag |
3983366 |
T |
|
| Q |
101 |
tcataatttttgtttactaaactctaaaaattggactgactcgttctttttcaagttacgaaaatgcataacatgggaatttcaacttatgtacgaattc |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3983365 |
tcataatttttttttactaaactctaaaaattggactgactcgttctttttcaagttacgaaaatgcataacatgggaatttcaacttatgtacgaattc |
3983266 |
T |
|
| Q |
201 |
tttgttaacaatcctttcgaacatgtattaact |
233 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
3983265 |
tttgttaacaatcctttcgaacatgtatgaact |
3983233 |
T |
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