View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18629_low_26 (Length: 238)
Name: NF18629_low_26
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18629_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 42825966 - 42825738
Alignment:
| Q |
6 |
agaagtatcaactcaaatactacctatattgggattattctgcgtaagaatttttgttgcctttcgaacttgagtgtggggttagaaatggaaatgaaat |
105 |
Q |
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| T |
42825966 |
agaagtatcaactcgaatactacctatattgggattattctgcgtaagaatttttgttgcctttcgaacttgagtgtggggttagaaatggaaatgaaat |
42825867 |
T |
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| Q |
106 |
ggttactggtttgttttgtacctcacgaaaaaagctagtttttccttgagaaagagattttcaagttgacgactcttcaagtttgctgaattcatgtcaa |
205 |
Q |
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| T |
42825866 |
ggttactggtttgttttgtacctcacgaaaaaagctagtttttccttgagaaagagattttcaagttgacgactcttcaagtttgctgaattcatgtcaa |
42825767 |
T |
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| Q |
206 |
caatggtataatttttggtgatgtccatc |
234 |
Q |
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| T |
42825766 |
caatggtataatttttggtgatgtacatc |
42825738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 42846560 - 42846486
Alignment:
| Q |
86 |
gttagaaatggaaatgaaatggttactggtttg-----ttttgtacctcacgaaaaaagctagtttttccttgaga |
156 |
Q |
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||||||||||| ||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| |
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| T |
42846560 |
gttagaaatgggaatgaaatggttactggttagatttcttttgtacctcac-aaaaaagctagtttttccttgaga |
42846486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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