View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18629_low_28 (Length: 231)
Name: NF18629_low_28
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18629_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 33673187 - 33673386
Alignment:
| Q |
10 |
agcagcacagatgaagctcatgtatgtctctttgattcttgtccattccattctcgtacatcatgcttttgtggatatatattttctctgttcgttttgc |
109 |
Q |
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| T |
33673187 |
agcaacacaaatgaagctcatgtatgtctctttgattcttgtccattccattctcgtacatcatgcttttgtggatatata-tttctctgttcgttttgc |
33673285 |
T |
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| Q |
110 |
tggcatcgaaatccaggatcnnnnnnntgtcaatttcatggtacaatttatttgaatattaagttcgtcccaaacccatttgcctttggaataatcacaa |
209 |
Q |
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| T |
33673286 |
tggcatcaaaatccaggatcaaaaaaatgtcagtttcatggcacaatttatttgaatattaagttcgtcccaaacccatttgcctttggaataatcacaa |
33673385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 210
Target Start/End: Complemental strand, 20303242 - 20303087
Alignment:
| Q |
56 |
tccattctcgtacatcatgcttttgtggatatatattttctctgttcgttttgctggcatcgaaatccaggat-cnnnnnnntgtcaa-tttcatggtac |
153 |
Q |
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| T |
20303242 |
tccattcttgtacatcatacttttgtggatatctattgtc-ctatttgttttgctggcatcagaatccaggataataataaaggacaattttcatgggaa |
20303144 |
T |
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| Q |
154 |
aatttatttgaatattaag-ttcgtcccaaacccatttgcctttggaataatcacaag |
210 |
Q |
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| T |
20303143 |
aatttatttgaatattaagtttcgtccc-aacccatttgcctttggagtaatcacaag |
20303087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 25704886 - 25704815
Alignment:
| Q |
143 |
tttcatggtacaatttatttgaatattaagtt-cgtcccaaacccatttgcctttggaataatcacaagctt |
213 |
Q |
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| T |
25704886 |
tttcatcgtacaacttatgtgaataataagtttcgtcccaaacccattgacctttggaaaaatcacatgctt |
25704815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 9711477 - 9711406
Alignment:
| Q |
143 |
tttcatggtacaatttatttgaatattaagtt-cgtcccaaacccatttgcctttggaataatcacaagctt |
213 |
Q |
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| T |
9711477 |
tttcatcgtacaacttatctgaataataagtttcgtcccaaacccattgacctttggaaaaatcacatgctt |
9711406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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