View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18629_low_3 (Length: 708)

Name: NF18629_low_3
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18629_low_3
NF18629_low_3
[»] chr3 (1 HSPs)
chr3 (19-683)||(43133143-43133806)


Alignment Details
Target: chr3 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 19 - 683
Target Start/End: Complemental strand, 43133806 - 43133143
Alignment:
Q  19 atttctggtgagaatcccactaattgtacgtttgtatagcaaaaacaagaccctagtaacatatacacataggagagggcctttttaagtgcatcattta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43133806 atttctggtgagaatcccactaattgtacgtttgtatagcaaaaacaagaccatagtaacatatacacataggagagggcctttttaagtgcatcattta 43133707  T
Q  119 tttatagtttgacactagaacaaagaatatgttccttggcctcatcatctaatttatcacgttaagcaatcatcaaatcaaacagaatacaatctgatta 218  Q
    |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43133706 t----agtttgacactagaacaaagaatatgttccttggcctcatcatctaatttatcacgttaagcaatcatcaaatcaaacagaatacaatctgatta 43133611  T
Q  219 gcaagaaatagattgagaatacaagttttgaaaccaatcatcaatcaaataagcaagatgagaatcatgctgtcctcgtacgttgggagtacgtgtttaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43133610 gcaagaaatagattgagaatacaagttttgaaaccaatcatcaatcaaataagcaagatgagaatcatgctgtcctcgtacgttgggagtacgtgtttaa 43133511  T
Q  319 cttgtaannnnnnnnagaattttatagttaacagaagcatgcatttttgttggttattaatatgaggtttcagacaggtggatggtatatcatctgtgtt 418  Q
    |||||||        | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43133510 cttgtaattttttttataattttatagttaacagaagcatgcatttttgttggttattaatatgaggtttcagacaggtggatggtatatcatctgtgtt 43133411  T
Q  419 ggcttttgttaattccccactcggatgtacttaaattgttgtgttgacaccgtgacactaaaaagacatgaattattgattaaaaatgtgttatttatca 518  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43133410 ggcttttattaattccccactcggatgtacttaaattgttgtgttgacaccgtgacactaaaaagacatgaattattgattaaaaatgtgttatttatca 43133311  T
Q  519 ttcctttagattttattctc-tttaagtaaacctatttattttagatacctctagacacaaaatgtgaatagcgcttctaacatattcaaaatttgg--t 615  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  43133310 ttcctttagattttattctcttttaagtaaacctatttattttagatacctctagacacaaaatgtgaatagcgcttctaacatattcaaaatttggttt 43133211  T
Q  616 ttggcatagaaatcaaatcattttccctttcacacgatccaacctcattcgtcgatcaaaatgtgtgt 683  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  43133210 ttggcatagaaatcaaatcattttccctatcacacgacccaacctcattcgtcgatcaaaatgtgtgt 43133143  T

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