View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18629_low_5 (Length: 512)

Name: NF18629_low_5
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18629_low_5
NF18629_low_5
[»] chr4 (4 HSPs)
chr4 (19-504)||(14349930-14350416)
chr4 (152-198)||(18404845-18404891)
chr4 (152-201)||(16581761-16581810)
chr4 (157-201)||(51954187-51954231)
[»] chr2 (3 HSPs)
chr2 (145-201)||(35203342-35203398)
chr2 (167-200)||(31159597-31159630)
chr2 (152-201)||(42222949-42222998)
[»] chr1 (4 HSPs)
chr1 (166-201)||(40257481-40257516)
chr1 (161-198)||(7129616-7129653)
chr1 (168-201)||(31297307-31297340)
chr1 (169-201)||(10526908-10526940)
[»] chr8 (2 HSPs)
chr8 (91-144)||(18897164-18897217)
chr8 (150-198)||(6569733-6569781)
[»] chr7 (2 HSPs)
chr7 (168-201)||(15905633-15905666)
chr7 (91-124)||(42295106-42295139)
[»] chr6 (1 HSPs)
chr6 (172-201)||(20678038-20678067)
[»] chr3 (1 HSPs)
chr3 (145-201)||(49397500-49397556)


Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Complemental strand, 14350416 - 14349930
Alignment:
Q  19 ttataggagtacaaggtggaaagttgaatgcttgaaccaaacggcaatgatagccctcgatactctatctgttaaacccacttgagttgggttagtggtg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14350416 ttataggagtacaaggtggaaagttgaatgcttgaaccaaacggcaatgatagccctcgatattctatctgttaaacccacttgagttgggttagtggtg 14350317  T
Q  119 ttggtttgggagattagagtttgctcgtctgatgttctattatcttaggtgtcaatttgggtgggttagtttagcttcttcaatacgtgttactgattcg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  14350316 ttggtttgggagattagagtttgctcgtctgatgttctattatctcaggtgtcaatttgggtgggttaatttaacttcttcaatacgtgttactgattcg 14350217  T
Q  219 ggaggggcacaccaaataattcggtttacattttatactaagatgtcaagatgtgataaaga-tatgttttcaattgatagttagatttacatatcacat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14350216 ggaggggcacaccaaataattcggtttacattttatactaagatgtcaagatgtgataaagattatgttttcaattgatagttagatttacatatcacat 14350117  T
Q  318 ttttattgtagttagttaatagttgttacaaacttagtttaaacttagatacaactgagttagtttgttcgcaatatgaatacatgtgatgtgtataatt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14350116 ttttattgtagttagttaatagttgttacaaacttagtttaaacttagatacaactgagttagtttgttcgcaatatgaatacatgtgatgtgtataatt 14350017  T
Q  418 cagtaagtgagagctactaaaatcataaacattatgagaggtcgtttctacatcaatatccctctattatattcctattattcatct 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  14350016 cagtaagtgagagctactaaaatcataaacattatgagaggtcgtttctacatcaatatccctctattatattcctgttatttatct 14349930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 18404891 - 18404845
Alignment:
Q  152 gttctattatcttaggtgtcaatttgggtgggttagtttagcttctt 198  Q
    |||| ||||||| ||||||||||||  ||||||||||||||||||||    
T  18404891 gttcgattatctaaggtgtcaatttaagtgggttagtttagcttctt 18404845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 16581761 - 16581810
Alignment:
Q  152 gttctattatcttaggtgtcaatttgggtgggttagtttagcttcttcaa 201  Q
    ||||||||||||  |||| ||||||| | |||||||||||||||||||||    
T  16581761 gttctattatctctggtgccaatttgagagggttagtttagcttcttcaa 16581810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 51954187 - 51954231
Alignment:
Q  157 attatcttaggtgtcaatttgggtgggttagtttagcttcttcaa 201  Q
    |||||||  |||||||||||||||||| || ||||||||||||||    
T  51954187 attatctccggtgtcaatttgggtgggctaatttagcttcttcaa 51954231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 35203398 - 35203342
Alignment:
Q  145 gtctgatgttctattatcttaggtgtcaatttgggtgggttagtttagcttcttcaa 201  Q
    |||| |||||| |||||||| |||||||||||  |||||||| ||||||||||||||    
T  35203398 gtctcatgttcgattatctttggtgtcaatttaagtgggttaatttagcttcttcaa 35203342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 31159630 - 31159597
Alignment:
Q  167 gtgtcaatttgggtgggttagtttagcttcttca 200  Q
    ||||||||||||||||| ||||||||||||||||    
T  31159630 gtgtcaatttgggtgggctagtttagcttcttca 31159597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 42222949 - 42222998
Alignment:
Q  152 gttctattatcttaggtgtcaatttgggtgggttagtttagcttcttcaa 201  Q
    |||| ||| |||| ||||||||||||||||||||| ||||| ||||||||    
T  42222949 gttcgattctcttcggtgtcaatttgggtgggttaatttagattcttcaa 42222998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 40257481 - 40257516
Alignment:
Q  166 ggtgtcaatttgggtgggttagtttagcttcttcaa 201  Q
    |||||||||||||||||| |||||||||||||||||    
T  40257481 ggtgtcaatttgggtgggctagtttagcttcttcaa 40257516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 7129653 - 7129616
Alignment:
Q  161 tcttaggtgtcaatttgggtgggttagtttagcttctt 198  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  7129653 tcttcggtgtcaatttaggtgggttagtttagcttctt 7129616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 31297307 - 31297340
Alignment:
Q  168 tgtcaatttgggtgggttagtttagcttcttcaa 201  Q
    |||||||||||||||||||||||| |||||||||    
T  31297307 tgtcaatttgggtgggttagtttaacttcttcaa 31297340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 10526908 - 10526940
Alignment:
Q  169 gtcaatttgggtgggttagtttagcttcttcaa 201  Q
    |||||||||||||||||| ||||||||||||||    
T  10526908 gtcaatttgggtgggttaatttagcttcttcaa 10526940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 18897164 - 18897217
Alignment:
Q  91 taaacccacttgagttgggttagtggtgttggtttgggagattagagtttgctc 144  Q
    |||||||||||| |||||  |||||||||||||||||||  ||||||| |||||    
T  18897164 taaacccacttgggttggcctagtggtgttggtttgggaccttagagtgtgctc 18897217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 6569781 - 6569733
Alignment:
Q  150 atgttctattatcttaggtgtcaatttgggtgggttagtttagcttctt 198  Q
    |||||| ||| |||| |||||||||||| | ||||||||||||||||||    
T  6569781 atgttcgattctctttggtgtcaatttgagggggttagtttagcttctt 6569733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 15905666 - 15905633
Alignment:
Q  168 tgtcaatttgggtgggttagtttagcttcttcaa 201  Q
    ||||||||||||||||||| ||||||||||||||    
T  15905666 tgtcaatttgggtgggttaatttagcttcttcaa 15905633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 42295139 - 42295106
Alignment:
Q  91 taaacccacttgagttgggttagtggtgttggtt 124  Q
    |||||||||||||||||| |||||||||||||||    
T  42295139 taaacccacttgagttggtttagtggtgttggtt 42295106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 20678067 - 20678038
Alignment:
Q  172 aatttgggtgggttagtttagcttcttcaa 201  Q
    ||||||||||||||||||||||||||||||    
T  20678067 aatttgggtgggttagtttagcttcttcaa 20678038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 49397556 - 49397500
Alignment:
Q  145 gtctgatgttctattatcttaggtgtcaatttgggtgggttagtttagcttcttcaa 201  Q
    |||| |||||| |||||||||| ||||||||| |||||  || ||||||||||||||    
T  49397556 gtctcatgttcgattatcttagatgtcaatttaggtggactaatttagcttcttcaa 49397500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University