View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18629_low_9 (Length: 430)
Name: NF18629_low_9
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18629_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 31805927 - 31805513
Alignment:
| Q |
1 |
tagtgttaacttgagtccataagaagaaagagcagccactaacgaatggatagaataatgataagcatagactgaattgactcacaaatcttacaaagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31805927 |
tagtgttaacttgagtccataagaagaaagagcagccactaacgaatggatagaataatgataagcatagactgaattgactcacaaatcttacaaagtg |
31805828 |
T |
|
| Q |
101 |
aagaaaaagcaataataatttagcttgaactatagtacatgtcctatatatatacacataaaaagaattgctaactaaccatgcagaaattgttggacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31805827 |
aagaaaaagcaataataatttagcttgaactatagtacatgtcctatatatatacacataaaaagaattgctaactaaccatgcagaaattgttggacaa |
31805728 |
T |
|
| Q |
201 |
atattatgaactatatgcccttttttgctggaccactgtccctctctagaattagtattcacatggagttataggggtgtgagattaaaacatatttagg |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31805727 |
atattatgaattatatgcccttttttgctggaccactgtccctctctagaattagtattcacatggagttataggggtgtgagattaaaacatatttagg |
31805628 |
T |
|
| Q |
301 |
ggttaaaattagagtaagagataattaattatctagaactgaaaaagcaacttcagaaatatgcaagccatggtcaaaacccttaaagacagacaaggaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31805627 |
ggttaaaattagagtaagagataattaattatctagaactgaaaaagcaacttcagaaatatgcaagccatgatcaaaacccttaaagacagacaaggaa |
31805528 |
T |
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| Q |
401 |
caagattattgttag |
415 |
Q |
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||||| ||||||||| |
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| T |
31805527 |
caagactattgttag |
31805513 |
T |
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