View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1862_high_3 (Length: 368)

Name: NF1862_high_3
Description: NF1862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1862_high_3
NF1862_high_3
[»] chr5 (3 HSPs)
chr5 (68-367)||(29589061-29589360)
chr5 (42-91)||(17980299-17980348)
chr5 (168-251)||(17980431-17980514)
[»] chr1 (2 HSPs)
chr1 (4-92)||(7096114-7096202)
chr1 (39-93)||(7584957-7585012)
[»] chr7 (1 HSPs)
chr7 (46-98)||(9623946-9623999)
[»] chr4 (1 HSPs)
chr4 (46-98)||(13613246-13613299)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 68 - 367
Target Start/End: Original strand, 29589061 - 29589360
Alignment:
Q  68 aaatatttcttaattatgatatgccattgtttgagannnnnnnaaataaattaaaaacaaataacaaaaatctagcagaactcacacctgagaatgaatc 167  Q
    ||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29589061 aaatatttcttaattatgatatgccattgttcgagatttttttaaataaattaaaaacaaataacaaaaatctagcagaactcacacctgagaatgaatc 29589160  T
Q  168 aagtcaccattatgtgattcatcagttgaatcatcgatggaaggctgaacattttgagacatggattcaagtgaaccttcaccatttactgattcttgta 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29589161 aagtcaccattatgtgattcatcagttgaatcatcgatggaaggctgaacattttgagacatggattcaagtgaaccttcaccatttactgattcttgta 29589260  T
Q  268 tcacattctccatgtcagattgttgaacacctaggtttatctcttggtctgcttctgtcttatgtggtattggcaatacagaccttggtgatgatgaaga 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29589261 tcacattctccatgtcagattgttgaacacctaggtttatctcttggtctgcttctgtcttatgtggtattggcaatacagaccttggtgatgatgaaga 29589360  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 17980299 - 17980348
Alignment:
Q  42 tgacaaatgataaaccatttaaatttaaatatttcttaattatgatatgc 91  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17980299 tgacaaatgataaaccatttaaatttaaatatttcttaattatcatatgc 17980348  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 17980431 - 17980514
Alignment:
Q  168 aagtcaccattatgtgattcatcagttgaatcatcgatggaaggctgaacattttgagacatggattcaagtgaaccttcacca 251  Q
    |||| ||| |||||||||||| || ||| |||||| |||||| |||||| ||||||||||||||| ||||| | ||||||||||    
T  17980431 aagttacctttatgtgattcaacatttggatcatccatggaaagctgaatattttgagacatggagtcaagaggaccttcacca 17980514  T

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Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 7096114 - 7096202
Alignment:
Q  4 attatactccaatgacgacattgatgcactattattaatgacaaatgataaaccatttaaatttaaatatttcttaattatgatatgcc 92  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7096114 attataatccaatgacgacattaatgcactattattaatgacaaatgataaaccatttaaatttaaatatttcttaattatgatatgcc 7096202  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 7585012 - 7584957
Alignment:
Q  39 taatgacaaatgataaa-ccatttaaatttaaatatttcttaattatgatatgcca 93  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7585012 taatgacaaatgataaaaccatttaaatttaaatatttcttaattatgatatgcca 7584957  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 9623999 - 9623946
Alignment:
Q  46 aaatgataaaccatttaaatttaaat-atttcttaattatgatatgccattgtt 98  Q
    |||||||||||||||||||||||  | |||| ||||||||||||||||| ||||    
T  9623999 aaatgataaaccatttaaatttatttaattttttaattatgatatgccaatgtt 9623946  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 13613246 - 13613299
Alignment:
Q  46 aaatgataaaccatttaaatttaaat-atttcttaattatgatatgccattgtt 98  Q
    |||||||||||||||||||||||  | |||| ||||||||||||||||| ||||    
T  13613246 aaatgataaaccatttaaatttatttaattttttaattatgatatgccaatgtt 13613299  T

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