View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1862_high_6 (Length: 324)
Name: NF1862_high_6
Description: NF1862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1862_high_6 |
 | |
|
| [»] chr5 (7 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 41708643 - 41708320
Alignment:
| Q |
1 |
tcttggtattcctttgattactaactttgaaatcagagatgaagagagtgaatatgagattgacaatgacactatggagcctaatactttgcaaacaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41708643 |
tcttggtattcctttgattactaactttgaaatcagagatgaagagagtgaatatgagattgacaatgacactatggagcctaatactttgcaaacaaat |
41708544 |
T |
|
| Q |
101 |
gaaccacccaacaaaaggagcaagaatgctcaaggtgcatcatcaggtatgacaattatgcatgcatctcttatttcttacttcctccctactttctttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41708543 |
gaaccacccaacaaaaggagcaagaatgctcaaggtgcatcatcaggtatgacaattatgcatgcatctcttatttcttacttcctccctactttctttc |
41708444 |
T |
|
| Q |
201 |
tttacaaacatcgaaattttcacacaaatttnnnnnnngtaggtatgaaaagagttttgactttcaagacattattatctggactactaagtcgttaatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41708443 |
tttacaaacatcgaaattttcacacaaatttaaaaaaagtaggtatgaaaagagttttgaccttcaagacattattatctggactactaagtcgttaatg |
41708344 |
T |
|
| Q |
301 |
acttgactatcaagatgttactaa |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
41708343 |
acttgactatcaagatgttactaa |
41708320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 41717715 - 41717571
Alignment:
| Q |
1 |
tcttggtattcctttgattactaactttgaaatcagagatgaagagagtgaatatgagattgacaatgacactatggagcctaatactttgcaaacaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41717715 |
tcttggtattcctttgattactaactttgaaatcagagatgaagagagtgaatatgagattgacaatgacactatggagcctaatactttgcaaacaaat |
41717616 |
T |
|
| Q |
101 |
gaaccacccaacaaaaggagcaagaatgctcaaggtgcatcatca |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41717615 |
gaaccacccaacaaaaggagcaagaatgctcaaggtgcatcatca |
41717571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 41503334 - 41503271
Alignment:
| Q |
112 |
caaaaggagcaagaatgctcaaggtgcatcatcaggtatgacaattatgcatgcatctcttatt |
175 |
Q |
| |
|
|||| |||||||| | ||||||||||||||||| |||||| |||| ||||||||||||||||| |
|
|
| T |
41503334 |
caaagggagcaaggacgctcaaggtgcatcatctggtatggaaattgtgcatgcatctcttatt |
41503271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 41688194 - 41688251
Alignment:
| Q |
118 |
gagcaagaatgctcaaggtgcatcatcaggtatgacaattatgcatgcatctcttatt |
175 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||| | || ||||||||| ||||||| |
|
|
| T |
41688194 |
gagcaaggatgctcaaggtgcatcatctggtatgaaatttctgcatgcatatcttatt |
41688251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 14691160 - 14691236
Alignment:
| Q |
87 |
ctttgcaaacaaatgaaccacccaacaaaaggagcaagaatgctcaaggtgcatcatcaggtatgacaattatgcat |
163 |
Q |
| |
|
||||||||| || ||| || |||| |||||||||||| ||| ||||||||||| ||||||||||| |||| ||||| |
|
|
| T |
14691160 |
ctttgcaaataattgagcctcccatgaaaaggagcaaggatgatcaaggtgcataatcaggtatgaaaattctgcat |
14691236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 28422840 - 28422902
Alignment:
| Q |
113 |
aaaaggagcaagaatgctcaaggtgcatcatcaggtatgacaattatgcatgcatctcttatt |
175 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||| |||||||| |||| ||||| ||| ||||||| |
|
|
| T |
28422840 |
aaaaggagtaaggatgctcaaggtccatcataaggtatgaaaattctgcatacatgtcttatt |
28422902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 14682742 - 14682818
Alignment:
| Q |
87 |
ctttgcaaacaaatgaaccacccaacaaaaggagcaagaatgctcaaggtgcatcatcaggtatgacaattatgcat |
163 |
Q |
| |
|
||||||||| || ||| || |||| |||||||| ||| || |||||||||||||| |||||||| |||||||||| |
|
|
| T |
14682742 |
ctttgcaaagaattgatcctcccatgaaaaggaggaagggtgatcaaggtgcatcattaggtatgaaaattatgcat |
14682818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University