View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1862_low_1 (Length: 666)
Name: NF1862_low_1
Description: NF1862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1862_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 107 - 649
Target Start/End: Complemental strand, 52800290 - 52799748
Alignment:
| Q |
107 |
atattataaatctagatagataaatagagaagctagggttagagaaagaaacatacgaggcggaggggctaatgtattcatgaagcttgccagtgctgga |
206 |
Q |
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| T |
52800290 |
atattataaatctagatagataaatagagaagctagggttagagaaagaaacatacgaggcggaggggctaatgtattcatgaagcttgccagtgctgga |
52800191 |
T |
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| Q |
207 |
aaacataataatagaaaccttagcatcacaaagaacagtgagctcattagccttcttgaaaagaccattccttcgttttgagtaagttacttgtcggtta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52800190 |
aaacataataatagaaaccttagcatcacaaagaacagtgagctcattagccttcttgaaaagaccattccttcgttttgagtaagttacttgtcggtta |
52800091 |
T |
|
| Q |
307 |
gttgtgttctcaattctcttgatctggctctttcctcgagccatagataacctacctagctatatatttcttcacctggnnnnnnnnnnnctttcaagtt |
406 |
Q |
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| T |
52800090 |
gttgtgttctcaattctcttgatctggatctttcctcgagccatagataacctacctagctatatatttcttcacctggttgtttttttttcttcaagtt |
52799991 |
T |
|
| Q |
407 |
tactatgtttgatttatgtctccttccttcctagttcctaccctctgtatagataagtcttggcatggaaattagaaagataaagttgagagatgcattt |
506 |
Q |
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| T |
52799990 |
tactatgtttgatttatgtctccttccttcctagttcctaccctctgtatagataagtcttggcatggaaattagaaagataaagttgagagatgcattt |
52799891 |
T |
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| Q |
507 |
cctataatggtatggtctttgccaaattacagaaagtttctcaagggtttgttataaatgtctatgctttttatcgttaacgctgtttcatgttggctag |
606 |
Q |
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| T |
52799890 |
cctataatggtatggtctttgccaaattacagaaagtttctcaagggtttgttataaatgtctatgctttttatcgttaacgctgtttcatgttggctag |
52799791 |
T |
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| Q |
607 |
tggggacccttgctttccgtcctactccgtcttatatgccgtt |
649 |
Q |
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| T |
52799790 |
tggggacccttgctttccgtccaactccgtcttatatgccgtt |
52799748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 52800402 - 52800324
Alignment:
| Q |
14 |
gatctaacctcataatgagagttccacagatcaattcctacagtcatctgatactgatcgaaaaactgctttgttctgc |
92 |
Q |
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| T |
52800402 |
gatctaacctcataatgagagttccacagatcaattcctacagtcatctgatactgatcgaaaaactgctttgttctgc |
52800324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 308
Target Start/End: Complemental strand, 8201198 - 8201110
Alignment:
| Q |
220 |
gaaaccttagcatcacaaagaacagtgagctcattagccttcttgaaaagaccattccttcgttttgagtaagttacttgtcggttagt |
308 |
Q |
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|||||||||||||||||||||||| | || |||| || |||||||| | ||||||||||| |||||||| || ||||| | |||||| |
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| T |
8201198 |
gaaaccttagcatcacaaagaacactaagttcatgtgctttcttgaatataccattccttctctttgagtatgtcacttgcctgttagt |
8201110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 326
Target Start/End: Original strand, 34830931 - 34831029
Alignment:
| Q |
228 |
agcatcacaaagaacagtgagctcattagccttcttgaaaagaccattccttcgttttgagtaagttacttgtcggttagttgtgttctcaattctctt |
326 |
Q |
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||||||||||||||||| || |||| ||| || || |||||||| ||||||||||| | | | || ||||||| ||| || |||||||||||||||| |
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| T |
34830931 |
agcatcacaaagaacagaaagttcataagcttttttcaaaagaccgttccttcgtttagcgaaggtaacttgtctgttgattttgttctcaattctctt |
34831029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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