View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1862_low_15 (Length: 236)
Name: NF1862_low_15
Description: NF1862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1862_low_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 41708040 - 41708262
Alignment:
| Q |
14 |
caaaaatcacatctgccaagcaaactagaaatctaccatagcatttatctgatcatgtatataattcaatatttattaagcaacattcattnnnnnnntg |
113 |
Q |
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| T |
41708040 |
caaaaatcacatctgccaagcaaactagaaatctaccatagcatttatctgatcatgtatataattcaatatttattaagcaacattcattaaaaaaatg |
41708139 |
T |
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| Q |
114 |
atatccttatagttcctccgaccttaattataagcacatagggagataatatatgtccataaatataagctctctttcaagtttctagannnnnnnncct |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41708140 |
atatccttatagttcctccgaccttaattataagcacatagggagataatatatgtccataaatataagctctctttcaagtttctagattttttttcct |
41708239 |
T |
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| Q |
214 |
ttccaaacataatcctaataccc |
236 |
Q |
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||||||||||||||||||||||| |
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| T |
41708240 |
ttccaaacataatcctaataccc |
41708262 |
T |
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