View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1862_low_16 (Length: 235)
Name: NF1862_low_16
Description: NF1862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1862_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40708726 - 40708506
Alignment:
| Q |
1 |
aatctcttcatctctattttttctnnnnnnnntaaatcaaattggctataactaaggaaattgctagaaaacttacctgaaactgtatcacatattagct |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40708726 |
aatctcttcatctctattttttctaaaaaaaaaaaatcaaattggctataactaaggaaattgctagaaaacttacctgaaactgtatcacatattagct |
40708627 |
T |
|
| Q |
101 |
cccaatatggaaaattgattgaaactcaacatcaaccaaaattggaaaaccaaaccaagaaactcagatagaacctaaaaccttcataacttctaaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40708626 |
cccaatatggaaaattgattgaaactcaacatcaaccaaaattggaaaaccaaaccaagaaactcagatagaacctaaaaccttcataacttctaaaaat |
40708527 |
T |
|
| Q |
201 |
cccaccatctcttctccaaac |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
40708526 |
cccaccatctcttctccaaac |
40708506 |
T |
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