View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1862_low_19 (Length: 225)

Name: NF1862_low_19
Description: NF1862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1862_low_19
NF1862_low_19
[»] chr5 (2 HSPs)
chr5 (41-209)||(4371150-4371318)
chr5 (154-209)||(4363347-4363402)
[»] chr6 (2 HSPs)
chr6 (116-209)||(931355-931449)
chr6 (116-209)||(10607842-10607936)
[»] chr4 (5 HSPs)
chr4 (116-209)||(12589726-12589820)
chr4 (116-209)||(46764683-46764777)
chr4 (116-209)||(11680776-11680869)
chr4 (116-209)||(11689055-11689148)
chr4 (133-209)||(25655162-25655235)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 41 - 209
Target Start/End: Complemental strand, 4371318 - 4371150
Alignment:
Q  41 atcagttttgaacaatttttcaaaatagtccaaaatcatattaatgttagacatgttacatacaaaatatctctcacaaaatatctagctactaaccaaa 140  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4371318 atcatttttgaacaatttttcaaaatagtccaaaatcatattaacgttagacatgttacatacaaaatatctctcacaaaatatctagctactaaccaaa 4371219  T
Q  141 atgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4371218 atgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaag 4371150  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 4363402 - 4363347
Alignment:
Q  154 caaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaag 209  Q
    |||||||||||||||||| || ||||||||| |||| |  ||||||||||||||||    
T  4363402 caaacagtatatgagatcatccttggaagcaacagcaggagcaattgggaagaaag 4363347  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 931355 - 931449
Alignment:
Q  116 acaaaatatctagctactaa----ccaaaatgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaag 209  Q
    ||||||||||||||||||||    ||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| |||||||    
T  931355 acaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgaga---tctttggaagcatcagctgcggcaattggaaagaaag 931449  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 10607936 - 10607842
Alignment:
Q  116 acaaaatatctagctac----taaccaaaatgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaag 209  Q
    |||||| ||||||||||    |||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  10607936 acaaaacatctagctactaattaaccaaaataactcatttttcaaacagtatatgaga---tctttggaagcatcagctgcggcaattgggaagaaag 10607842  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 12589820 - 12589726
Alignment:
Q  116 acaaaatatctagctactaa----ccaaaatgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaag 209  Q
    ||||||||||||||||||||    ||||||| ||||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||||    
T  12589820 acaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgaga---tctttggaagcatcagttgcggcaattgggaagaaag 12589726  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 46764683 - 46764777
Alignment:
Q  116 acaaaatatctagctactaa----ccaaaatgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaag 209  Q
    ||||||||||||||||||||    ||||||| ||||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||||    
T  46764683 acaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgaga---tctttggaagcatcagttgcggcaattgggaagaaag 46764777  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 11680776 - 11680869
Alignment:
Q  116 acaaaatatctagctactaa----ccaaaatgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaag 209  Q
    ||||||||||||||||||||    ||||||| ||||||||||||| ||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  11680776 acaaaatatctagctactaattaaccaaaataactcatttttcaa-cagtatatgagatctt---tggaagcatcagctgcggcaattgggaagaaag 11680869  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 11689055 - 11689148
Alignment:
Q  116 acaaaatatctagctactaa----ccaaaatgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaag 209  Q
    ||||||||||||||||||||    ||||||| ||||||||||||| ||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  11689055 acaaaatatctagctactaattaaccaaaataactcatttttcaa-cagtatatgagatctt---tggaagcatcagctgcggcaattgggaagaaag 11689148  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 25655235 - 25655162
Alignment:
Q  133 taaccaaaatgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaag 209  Q
    |||||||||| ||||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||||    
T  25655235 taaccaaaataactcatttttcaaacagtatatgaga---tctttggaagcatcagttgcggcaattgggaagaaag 25655162  T

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