View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1862_low_3 (Length: 463)
Name: NF1862_low_3
Description: NF1862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1862_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 13 - 449
Target Start/End: Complemental strand, 33998511 - 33998074
Alignment:
| Q |
13 |
aatatgtgtataatttgatttgaaaagtcatgatttgtcaatataagagattgtggtgaattcttgtagcaagttagagtggagtgcatatcgttcacct |
112 |
Q |
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| T |
33998511 |
aatatgtgtataatttgatttgaaaagtcatgatttgtcaatataagagattgtggtgaattcttgtagcaagttagagtggagtgcatatcgttcacct |
33998412 |
T |
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| Q |
113 |
aattaactcaagattcaatcatagatatagagattattcttgttgagatgccttatttcattggcaccaattggttttactttttctggacagattcact |
212 |
Q |
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| T |
33998411 |
aattaactcaagattcaatcatagatatagagatcattcttgttgagatgccttatttcattggcaccaattggttttactttttctggacagattcact |
33998312 |
T |
|
| Q |
213 |
tacaatagtgctattgtgcttcctaacttcatctt-gacagattgaaaattgattcctttaaatgaagctttgatgaggtttctctattgtgacttgcat |
311 |
Q |
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| T |
33998311 |
tacaatagtgctattgtgcttcctaacttcatcttggacagattcaaaattgattcctttaaatgaagctttgatgaggtttctctattgtgacttgcat |
33998212 |
T |
|
| Q |
312 |
tgaaagatttagcatcaattgcacctaaatgcttgtagggaccaatgtctctctttccaagctccatacttataccatacggatcccataactatgttcc |
411 |
Q |
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| T |
33998211 |
tgaaagatttagcatcaattgcacctaaatgcttgtagggaccaatgtctctcttttcaagctccacacttataccatacggatcccataactatgttcc |
33998112 |
T |
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| Q |
412 |
ttcaacacaaaagatttcaagttcataagggtgatgat |
449 |
Q |
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| T |
33998111 |
ttcaacacaaaagatttcaagttcataagggtgatgat |
33998074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 306 - 419
Target Start/End: Complemental strand, 6230188 - 6230075
Alignment:
| Q |
306 |
ttgcattgaaagatttagcatcaattgcacctaaatgcttgtagggaccaatgtctctctttccaagctccatacttataccatacggatcccataacta |
405 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| |||||| |||| || || |||||||| ||||| |||| |
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| T |
6230188 |
ttgcattgaaagatttagcatcaattgcacataaatgcttgtagggaccaatatccctccttccaaattccagacagatgccatacgggtcccaaaactc |
6230089 |
T |
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| Q |
406 |
tgttccttcaacac |
419 |
Q |
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| T |
6230088 |
tgttccttcaacac |
6230075 |
T |
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