View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1862_low_4 (Length: 454)
Name: NF1862_low_4
Description: NF1862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1862_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 445
Target Start/End: Original strand, 5159337 - 5159757
Alignment:
| Q |
19 |
ctccaagaatttgagacttcatcttcttgttttgtcatatgcactcnnnnnnn-cttgaaattttttaaatagtcaaacataatttgtaaannnnnnn-g |
116 |
Q |
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| T |
5159337 |
ctccaagaatttgagacttcatcttcttgttttgtcatatgcactcaaaaaaaacttgaaattttttaaatagtcaaacataatttgtaaattttttttg |
5159436 |
T |
|
| Q |
117 |
gggaatagttcttacagatttatttattgaaaattatatctctaactatgtactctcnnnnnnnn-ctgcagatgttcaacatttgaaaaacttgaaaat |
215 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5159437 |
gggaatagttcttacagatttatttattgaaa-ttatatctctaactatgtactctctttttttttctgcagatgttcaacatttgaaaaacttgaaaat |
5159535 |
T |
|
| Q |
216 |
gttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggttttgg |
315 |
Q |
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| T |
5159536 |
gttaactttaagctataatcaaatgaacggctcaattgaaggtatgaatactaccaaacacaaataattaattcataactgcttcac------------g |
5159623 |
T |
|
| Q |
316 |
ggatggattgttacaatgaagataacttttttattgattttacattttaaataattaacaaaaacaatgaaataag----ttgatgtatatattgacgcc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
5159624 |
ggatggattgttacaatgaagataacttttttattgattttaaattttaaataattaacaaaaacaatgaaataagttaattaatgtatatattgacgcc |
5159723 |
T |
|
| Q |
412 |
attggaaaaactttaagatttttatgatgatgtc |
445 |
Q |
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| T |
5159724 |
attggaaaaactttaagatttttatgataatgtc |
5159757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 116 - 445
Target Start/End: Original strand, 5195065 - 5195403
Alignment:
| Q |
116 |
ggggaatagttcttacagatttatttattgaaaattatatctctaactatgtactctcnnnnnnnn----ctgcagatgttcaacatttgaaaaacttga |
211 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
5195065 |
ggggaatagttcttaccgatttatttattgaaaattatatctctaactatgtactctctttttttttcttctgcagatgttcaacatttgaaaaatttga |
5195164 |
T |
|
| Q |
212 |
aaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggtt |
311 |
Q |
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||||||||| ||||| | ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5195165 |
aaatgttaagtttaaacgataatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaaataattaattcataattgcttcacgggatggtt |
5195264 |
T |
|
| Q |
312 |
ttggggatggattgttacaatgaagataacttttttattgattttacattttaaataattaacaaaaacaatgaaataag----ttgatgtatatattga |
407 |
Q |
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| T |
5195265 |
ttggggatcgattgttacaatgaagataacttttttttttattttaaattttaaataattaacaaaaacaacgaaataagttaattaatgtatatattga |
5195364 |
T |
|
| Q |
408 |
cgccattggaaaaac-tttaagatttttatgatgatgtc |
445 |
Q |
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||||||||||||||| ||||||||||||||||| ||||| |
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| T |
5195365 |
cgccattggaaaaacttttaagatttttatgataatgtc |
5195403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 155 - 445
Target Start/End: Original strand, 5181710 - 5182005
Alignment:
| Q |
155 |
tctctaactatgtactctcnnnnnnnnctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattca |
254 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |
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| T |
5181710 |
tctctaactatgtactctctttttttcctgcagatgttcaacatttgaaaaacttgaaaatgttaagtttaagaaataatcaaatgaacggctcaattga |
5181809 |
T |
|
| Q |
255 |
aggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggttttggggatggattgttacaatgaagataacttttttattgatt |
354 |
Q |
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| T |
5181810 |
aggtatcaatactaccaaacacaaataattaattcataattgcttcacgggatggttttggggatggattgttacaatgaagataacttttatattgatt |
5181909 |
T |
|
| Q |
355 |
ttacattttaaataattaacaaaaacaatgaaataag----ttgatgtatatattgacgccattggaaaaac-tttaagatttttatgatgatgtc |
445 |
Q |
| |
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||| ||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
5181910 |
ttaaattttaaataattaacaaaaagaatgaaataagttaattaatgtatatattgacgccattggaaaaacttttaagatttttatgataatgtc |
5182005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 183 - 288
Target Start/End: Original strand, 5172489 - 5172594
Alignment:
| Q |
183 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataa |
282 |
Q |
| |
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||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| |
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| T |
5172489 |
tgcagatgttcaacacttgaaaaaattgaaaatgttaagtttaagctataatcaaatgaacggctcaattgaaggtatcaatactatcaaacataaataa |
5172588 |
T |
|
| Q |
283 |
ttaatt |
288 |
Q |
| |
|
|||||| |
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|
| T |
5172589 |
ttaatt |
5172594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 183 - 288
Target Start/End: Complemental strand, 4843133 - 4843028
Alignment:
| Q |
183 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataa |
282 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||| ||||||| |||||| |||||| |
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| T |
4843133 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaaggttaagcgataatcaaatgaagggctcaattgaaggtatcaatactatcaaacataaataa |
4843034 |
T |
|
| Q |
283 |
ttaatt |
288 |
Q |
| |
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|||||| |
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|
| T |
4843033 |
ttaatt |
4843028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 283
Target Start/End: Original strand, 5212716 - 5212815
Alignment:
| Q |
184 |
gcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataat |
283 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| |||| || | |||||||||||||||||| || ||||||| |||| ||||||||||||||||| |
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| T |
5212716 |
gcagatgttcaacatttgagaaacttgaaaatgctaagtttatgcaacaatcaaatgaacggctcacttgaaggtattaatattaccaaacacaaataat |
5212815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 4842927 - 4842849
Alignment:
| Q |
370 |
ttaacaaaaacaatgaaataagt----tgatgtatatattgacgccattggaaaaactttaagatttttatgatgatgt |
444 |
Q |
| |
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||||||||||||||||||||||| | || |||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
4842927 |
ttaacaaaaacaatgaaataagtaaattaatttatatattgagtccattggaaaaactttaagatttttatgataatgt |
4842849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 5181565 - 5181608
Alignment:
| Q |
19 |
ctccaagaatttgagacttcatcttcttgttttgtcatatgcac |
62 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
5181565 |
ctccaagaatttgagatttcatcttcttgttttgtcatatgcac |
5181608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 398 - 445
Target Start/End: Original strand, 5172630 - 5172677
Alignment:
| Q |
398 |
tatatattgacgccattggaaaaactttaagatttttatgatgatgtc |
445 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
5172630 |
tatatattgagtccattggaaaaactttaagatttttatgataatgtc |
5172677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 4843183 - 4843149
Alignment:
| Q |
138 |
atttattgaaaattatatctctaactatgtactct |
172 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |
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|
| T |
4843183 |
atttattgaatattatatctctaactatgtactct |
4843149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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