View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1862_low_6 (Length: 346)
Name: NF1862_low_6
Description: NF1862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1862_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 72 - 330
Target Start/End: Original strand, 52888192 - 52888450
Alignment:
| Q |
72 |
cttcccatcctcaatatgcaattcttaattcctttttgaatttcacttctccgttgtcactgtttattactcgcaaccacttgccaaaaatgtcttcgtg |
171 |
Q |
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| T |
52888192 |
cttcccatcctcaatatgcaattcttaattcctttttgaatttcacttctcctttgtcactgtttattacttgcaaccacttgccaaaaatgtcttcttg |
52888291 |
T |
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| Q |
172 |
ttttagtggaacaggaggaagaaccatcggtttggatttagatatagttaaatcatcaccaccatgttcatggagtcgaacatcacaaacatcttcttca |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52888292 |
ttttagtggaacaggaggaagaaccatcggtttggatttagatatagttaaatcatcaccaccatgttcatggagtcgaacatcacaaacatcttcttca |
52888391 |
T |
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| Q |
272 |
ccttcttcaacaatctccgaatcaagcaattcaccacttgcaatctacaccactaaacc |
330 |
Q |
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| T |
52888392 |
ccttcttcaacaatctccgaatcaagcaattcaccacttgcaatctacaccactaaacc |
52888450 |
T |
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