View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18630_low_1 (Length: 291)
Name: NF18630_low_1
Description: NF18630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18630_low_1 |
 | |
|
| [»] scaffold0525 (1 HSPs) |
| | |
|
| [»] scaffold1412 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 5444152 - 5444386
Alignment:
| Q |
19 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
5444152 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtgcctttggtgtgaagtttgttcaacatatgatctccttccattgaagat |
5444251 |
T |
|
| Q |
119 |
tttggcctttccttgcacttctttttcttttggatatcatcattgattttggatatcctagtttttcttgtcttgtgcttctgttcatgatggatcagcc |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5444252 |
tttggcccttccttgcacttctttttcttttggatatcatcattgattttggatatccttg-ttttcttgtcttctgcttctgttcatgatggatcagcc |
5444350 |
T |
|
| Q |
219 |
atgttgataagcttccgtcatgaatggttaagcgtt |
254 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5444351 |
atgttgatacgcttccgtcatgaatggttaagcgtt |
5444386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 55850339 - 55850266
Alignment:
| Q |
183 |
ttcttgtcttgtgcttctgttcatgatggatcagccatgttgataagcttccgtcatgaatggttaagcgttgt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||| | || |||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
55850339 |
ttcttgtcttgtgcttctgttcatgatggttaagacatgttgatatgcttccatcatgaatggttaagcgttgt |
55850266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 11814703 - 11814773
Alignment:
| Q |
186 |
ttgtcttgtgcttctgttcatgatggatcagccatgttgataagcttccgtcatgaatggttaagcgttgt |
256 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
11814703 |
ttgtcttgtgcttctgttcatgatggttaagccatgttgataggctttcgtcatgaatggtttggcgttgt |
11814773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 35305341 - 35305105
Alignment:
| Q |
19 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35305341 |
agggcatctctttttatatctcttggaaccttgatcttgttgcttcagggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagat |
35305242 |
T |
|
| Q |
119 |
tttggcctttccttgcacttctttttcttttggatatcatcattgattttggatatcctagtttttcttgtcttgtgcttctgttcatgatggatcagcc |
218 |
Q |
| |
|
|||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| | || | |
|
|
| T |
35305241 |
tttgacccttccttgcacttctttttc-tttggatatcatcattgattttggatatccttgtatttcttgtcttgtgcttctgttcatgatggttaagac |
35305143 |
T |
|
| Q |
219 |
atgttgataagcttccgtcatgaatggttaagcgttgt |
256 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
35305142 |
atgttgatatgcttccgtcatgaatagttaagcgttgt |
35305105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 21256034 - 21256266
Alignment:
| Q |
19 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagat |
118 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
21256034 |
agggcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtacctttggtgtgcagtttgttcaacatatgacctccttccattgtaaac |
21256131 |
T |
|
| Q |
119 |
tttggcctttccttgcacttctttttcttttggatatcatcattgattttggatatcctagtttttcttgtcttgtgcttctgttcatgatggatcagcc |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||| |
|
|
| T |
21256132 |
tttggcccttccttgcacttctttttcttttggatatcatcattgattttggatatccttactcttcttgtcttgtgcttctgttcatgatggttaagct |
21256231 |
T |
|
| Q |
219 |
atgttgataagcttccgtcatgaatggttaagcgt |
253 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
21256232 |
atgttgataagcttctgtcataaatggttaagcgt |
21256266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 17823254 - 17823291
Alignment:
| Q |
243 |
tggttaagcgttgtgccttaattggctttgttgatgat |
280 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17823254 |
tggttaagcgttgtgccttaatcggctttgttgatgat |
17823291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 26174838 - 26175071
Alignment:
| Q |
19 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagat |
118 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26174838 |
agggcatctcttttcttatct-ttggaaccttggtcttgtcacttcatggtacctttggtgtgacgtttgttcaacatatgacctccttccattgtagat |
26174936 |
T |
|
| Q |
119 |
tttggcctttccttgcacttctttttcttttggatatcatcattgattttggatatcctagttttt-cttgtcttgtgcttctgttcatgatggatcagc |
217 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
26174937 |
tttggcccttccttgcacttctttt------ggatatcatcattgattttggatatccttgttttttcttgttttgtgcttctgttcatgatggatcagc |
26175030 |
T |
|
| Q |
218 |
catgttgataagcttccgtcatgaatggttaagcgttgtgc |
258 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26175031 |
catgttgataagctttcgtcatgaatggttaagcgttgtgc |
26175071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 4677306 - 4677489
Alignment:
| Q |
19 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4677306 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttattcaacatatgacctccttccattgtagat |
4677405 |
T |
|
| Q |
119 |
tttggcctttccttgcacttctttttcttttggatatcatcattga-ttttggatatcctagtttttcttgtcttgtgcttctg |
201 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | || ||||||||||||| |
|
|
| T |
4677406 |
tttggcccttccttgcacttctttttcttttggatatcatcattgatttttggatatccttgttctctttttcttgtgcttctg |
4677489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 41 - 253
Target Start/End: Complemental strand, 7275845 - 7275636
Alignment:
| Q |
41 |
ttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagattttggcctttccttgcacttct |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | ||||||| ||||||||| || |
|
|
| T |
7275845 |
ttggaaccttggtcttgttgcttcatggtacctttgatgtgcagtttgttcaacatatgacctccttccattgtaaactttggcccttccttgca---ct |
7275749 |
T |
|
| Q |
141 |
ttttcttttggatatcatcattgattttggatatcctagtttttcttgtcttgtgcttctgttcatgatggatcagccatgttgataagcttccgtcatg |
240 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||||| |
|
|
| T |
7275748 |
ttttcttttggagatcatcattgattttagatatccttactcttcttgtcttgtgcttctgttcatgatggttaagctatgttgataagcttctgtcatg |
7275649 |
T |
|
| Q |
241 |
aatggttaagcgt |
253 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7275648 |
aatggttaagcgt |
7275636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 29864994 - 29864914
Alignment:
| Q |
39 |
tcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagatt |
119 |
Q |
| |
|
||||||||| ||||| ||| |||| ||||| ||||| |||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
29864994 |
tcttggaactttggtattggtgctacatggaaccttaggtgtgaagtttgtctaacatatgatctccttccattgtagatt |
29864914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 4677507 - 4677544
Alignment:
| Q |
243 |
tggttaagcgttgtgccttaattggctttgttgatgat |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4677507 |
tggttaagcgttgtgccttaattggctttgttgatgat |
4677544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 26175147 - 26175185
Alignment:
| Q |
242 |
atggttaagcgttgtgccttaattggctttgttgatgat |
280 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26175147 |
atggttaagcgtggtgccttaattggctttgttgatgat |
26175185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 24038873 - 24039105
Alignment:
| Q |
19 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagat |
118 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
24038873 |
agggcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtacctttggtgtgcagtttgttcaacatatgacctccttccattgtaaac |
24038970 |
T |
|
| Q |
119 |
tttggcctttccttgcacttctttttcttttggatatcatcattgattttggatatcctagtttttcttgtcttgtgcttctgttcatgatggatcagcc |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||| |
|
|
| T |
24038971 |
tttggcccttccttgcacttctttttcttttggatatcatcattgattttggatatccttactcttcttgtcttgtgcttctgttcatgatggttaagct |
24039070 |
T |
|
| Q |
219 |
atgttgataagcttccgtcatgaatggttaagcgt |
253 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
24039071 |
atgttgataagcttctgtcataaatggttaagcgt |
24039105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 31270185 - 31269953
Alignment:
| Q |
19 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagat |
118 |
Q |
| |
|
||||||||||||||| || || ||||||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
31270185 |
agggcatctcttttt-taact-ttggaaccttgtttttgttgctttatggtacctttggtgtgtagtttgttcaacatatgacctccttccattgtaaac |
31270088 |
T |
|
| Q |
119 |
tttggcctttccttgcacttctttttcttttggatatcatcattgattttggatatcctagtttttcttgtcttgtgcttctgttcatgatggatcagcc |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||| |
|
|
| T |
31270087 |
tttggcccttccttgcacttctttttcttttggatatcatcattgattttggatatccttactcttcttgtcttgtgcttctgttcatgatggttaagct |
31269988 |
T |
|
| Q |
219 |
atgttgataagcttccgtcatgaatggttaagcgt |
253 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| |
|
|
| T |
31269987 |
atgttgataagcttttgtcattaatggttaagcgt |
31269953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 36316650 - 36316618
Alignment:
| Q |
243 |
tggttaagcgttgtgccttaattggctttgttg |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
36316650 |
tggttaagcgttgtgccttaattggctttgttg |
36316618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 18703747 - 18703515
Alignment:
| Q |
19 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagat |
118 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18703747 |
agggcatctcttttt-tatct-ttggaaccttggtcttgttgcttcatggtatctttggtgtgaagtttgttcaacatatgacctcattccattgtagac |
18703650 |
T |
|
| Q |
119 |
tttggcctttccttgcacttctttttcttttggatatcatcattgattttggatatcctagtttttcttgtcttgtgcttctgttcatgatggatcagcc |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| ||||||||||||||| | ||| |
|
|
| T |
18703649 |
tttggcccttccttgcacttctttttcttttggatatcatcattgattttggatatctttactcttcttgtcttgtgtttctgttcatgatggttaagct |
18703550 |
T |
|
| Q |
219 |
atgttgataagcttccgtcatgaatggttaagcgt |
253 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18703549 |
atgttgataagcttctgtcatgaatggttaagcgt |
18703515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 9906538 - 9906309
Alignment:
| Q |
19 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagat |
118 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
9906538 |
agggcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtacctttggtgtgcagtttgttcaacatatgacctccttccattgtaaac |
9906441 |
T |
|
| Q |
119 |
tttggcctttccttgcacttctttttcttttggatatcatcattgattttggatatcctagtttttcttgtcttgtgcttctgttcatgatggatcagcc |
218 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||| |
|
|
| T |
9906440 |
tttggcccttccttgca---ctttttcttttggatatcatcattgattttggatatccttactcttcttgtcttgtgcttctgttcatgatggttaagct |
9906344 |
T |
|
| Q |
219 |
atgttgataagcttccgtcatgaatggttaagcgt |
253 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
9906343 |
atgttgataagcttctgtcataaatggttaagcgt |
9906309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 35268062 - 35267989
Alignment:
| Q |
183 |
ttcttgtcttgtgcttctgttcatgatggatcagccatgttgataagcttccgtcatgaatggttaagcgttgt |
256 |
Q |
| |
|
||||||| ||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35268062 |
ttcttgtgttgtgcttctgttcatgatggttaagccatgttgataagcttctgtcatgaatggttaagcgttgt |
35267989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 35267893 - 35267856
Alignment:
| Q |
243 |
tggttaagcgttgtgccttaattggctttgttgatgat |
280 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
35267893 |
tggttaagtgttgtgccttaattggcattgttgatgat |
35267856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 42657523 - 42657287
Alignment:
| Q |
19 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagat |
118 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | |
|
|
| T |
42657523 |
agggcatctcttttt-tatct-ttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgatcaacatatgacctccttccatcgtaaac |
42657426 |
T |
|
| Q |
119 |
tttggcctttccttgcacttctttttcttttggatatcatcattgattttggatatcctagtttttcttgtcttgtgcttctgttcatgatggatcagcc |
218 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||| | ||| |
|
|
| T |
42657425 |
tttggcccttcctagcacttctttttgttttggatatcatcattgattttggatatccttg-ttttcttgtcttgtacttctgttcatgatggttaagct |
42657327 |
T |
|
| Q |
219 |
atgttgataagcttccgtcatgaatggttaagcgttgtgc |
258 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
42657326 |
atgttgataggcttctgtcatgaatggttaagcgttgtgc |
42657287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 10745186 - 10745256
Alignment:
| Q |
186 |
ttgtcttgtgcttctgttcatgatggatcagccatgttgataagcttccgtcatgaatggttaagcgttgt |
256 |
Q |
| |
|
|||| ||||| ||||||||||||||| | ||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
10745186 |
ttgtattgtgattctgttcatgatggttaagccatgttgataagcttctgtcatgaatggttaagtgttgt |
10745256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 4607167 - 4607203
Alignment:
| Q |
242 |
atggttaagcgttgtgccttaattggctttgttgatg |
278 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
4607167 |
atggttaagcgttgtgccctaattggctttgtcgatg |
4607203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0525 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: scaffold0525
Description:
Target: scaffold0525; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 6646 - 6414
Alignment:
| Q |
19 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagat |
118 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | |
|
|
| T |
6646 |
agggcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtacctttggtatgcagtttgttcaacatatgacctccttccattgtaaac |
6549 |
T |
|
| Q |
119 |
tttggcctttccttgcacttctttttcttttggatatcatcattgattttggatatcctagtttttcttgtcttgtgcttctgttcatgatggatcagcc |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||| |
|
|
| T |
6548 |
tttggcccttccttgcacttctttttcttttggatatcatcattgattttggatatccttactcttcttgtcttgtgcttctgttcatgatggttaagct |
6449 |
T |
|
| Q |
219 |
atgttgataagcttccgtcatgaatggttaagcgt |
253 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
6448 |
atgttgataagcttttgtcatgaatggttaagcgt |
6414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 41832020 - 41832252
Alignment:
| Q |
19 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagat |
118 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | |
|
|
| T |
41832020 |
agggcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtacctttggtatgcagtttgttcaacatatgacctccttccattgtaaac |
41832117 |
T |
|
| Q |
119 |
tttggcctttccttgcacttctttttcttttggatatcatcattgattttggatatcctagtttttcttgtcttgtgcttctgttcatgatggatcagcc |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||| |
|
|
| T |
41832118 |
tttggcccttccttgcacttctttttcttttggatatcatcattgattttggatatccttactcttcttgtcttgtgcttctgttcatgatggttaagct |
41832217 |
T |
|
| Q |
219 |
atgttgataagcttccgtcatgaatggttaagcgt |
253 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
41832218 |
atgttgataagcttctgtcataaatggttaagcgt |
41832252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 77 - 258
Target Start/End: Original strand, 34512293 - 34512473
Alignment:
| Q |
77 |
gtgtgaagtttgttcaacatatgacctccttccattgtagattttggcctttccttgcacttctttttcttttggatatcatcattgattttggatatcc |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34512293 |
gtgtgaagtttgttcaacatatgacctccttccattgtagactttggcccttccttgcacttctttt-cttttggatatcatcattgattttggatatcc |
34512391 |
T |
|
| Q |
177 |
tagtttttcttgtcttgtgcttctgttcatgatggatcagccatgttgataagcttccgtcatgaatggttaagcgttgtgc |
258 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
34512392 |
ttgtttttcttgtcttgtgcttctgttcatgatggttaagctatgttaataagcttctgtcatgaatggttaagcgttgtgc |
34512473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 33 - 225
Target Start/End: Original strand, 7734740 - 7734931
Alignment:
| Q |
33 |
tatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagattttggcctttcctt |
132 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | |||||| |
|
|
| T |
7734740 |
tatatctcttagaacctaggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgatctccttccattgtagatttggggccttcctt |
7734839 |
T |
|
| Q |
133 |
gcacttctttttcttttggatatcatcattgattttggatatcctagtttttcttgtcttgtgcttctgttcatgatggatcagccatgttga |
225 |
Q |
| |
|
||| || ||||||| |||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
7734840 |
gcaattgtttttctcttggatatcatcattgattttggatatcattg-ttttcttgtcttgtgcttctgttcatgatggttcagtcatgttga |
7734931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 7736902 - 7736971
Alignment:
| Q |
181 |
ttttcttgtcttgtgcttctgttcatgatggatcagccatgttgataagcttccgtcatgaatggttaag |
250 |
Q |
| |
|
||||||||| || ||||| |||||||||||| |||| ||| |||||||||||| ||||||| ||||||| |
|
|
| T |
7736902 |
ttttcttgtattatgcttttgttcatgatggttcagtcatattgataagcttctatcatgaacggttaag |
7736971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1412 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold1412
Description:
Target: scaffold1412; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 506 - 268
Alignment:
| Q |
19 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagat |
118 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
506 |
agggcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtacctttggtgtgcagtttgttcaacatatgacctccttccattgtaaac |
409 |
T |
|
| Q |
119 |
tttggcctttccttgcacttc-tttttcttttggatatcatcattgattttggatatcctagtttttcttgtcttgtgcttctgttcatgatggatcagc |
217 |
Q |
| |
|
||||||| |||||||| |||| ||||| |||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
408 |
tttggcccttccttgcgcttctttttttttttggatatcatcattgttgttggatatccttgtttttcttgtcttgtgcttctgttcatgatggttaagc |
309 |
T |
|
| Q |
218 |
catgttgataagcttccgtcatgaatggttaagcgttgtgc |
258 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
308 |
tatgttgataagcttctgtcatgaatggttaagcattgtgc |
268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 145365 - 145127
Alignment:
| Q |
19 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagat |
118 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
145365 |
agggcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtacctttggtgtgcagtttgttcaacatatgacctccttccattgtaaac |
145268 |
T |
|
| Q |
119 |
tttggcctttccttgcacttc-tttttcttttggatatcatcattgattttggatatcctagtttttcttgtcttgtgcttctgttcatgatggatcagc |
217 |
Q |
| |
|
||||||| |||||||| |||| ||||| |||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
145267 |
tttggcccttccttgcgcttctttttttttttggatatcatcattgttgttggatatccttgtttttcttgtcttgtgcttctgttcatgatggttaagc |
145168 |
T |
|
| Q |
218 |
catgttgataagcttccgtcatgaatggttaagcgttgtgc |
258 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
145167 |
tatgttgataagcttctgtcatgaatggttaagcattgtgc |
145127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 6823777 - 6823540
Alignment:
| Q |
19 |
agggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttggtgtgaagtttgttcaacatatgacctccttccattgtagat |
118 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
6823777 |
agggcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtatctttggtgtgcagtttgttcaacatatgacctccttccattgtaaac |
6823680 |
T |
|
| Q |
119 |
tttggcctttccttgcacttctttttcttttggatatcatcattgattttggatatcctagtttttcttgtcttgtgcttctgttcatgatggatcagcc |
218 |
Q |
| |
|
||||||| |||||||| ||||||||| |||| ||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
6823679 |
tttggcccttccttgcgcttcttttttttttagatatcatcattgttgttggatatccttgtttttcttgtcttgtgcttctgttcatgatggttaagct |
6823580 |
T |
|
| Q |
219 |
atgttgataagcttccgtcatgaatggttaagcgttgtgc |
258 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
6823579 |
atgttgataagcttctggcatgaatggttaagcgttgtgc |
6823540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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