View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18631_high_2 (Length: 300)
Name: NF18631_high_2
Description: NF18631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18631_high_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 26 - 300
Target Start/End: Complemental strand, 29607700 - 29607426
Alignment:
| Q |
26 |
agaccacaatacaatgaaagaacaaaaggataagaaaaatattatgagtataattgttcatcattcaattccatacatatgaaataattttatatttttg |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29607700 |
agaccacaatacaatgaaagaacaaaaggataagaaaaatattatgagtataattgttcatcattcaattccatacatatgaaataattttatatttttg |
29607601 |
T |
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| Q |
126 |
caaaccaaataaccgtttcgctcgaatccatgttttgtcatatgagcatcttctgcagttactcaagtgacacataacaaaatggcaatagcaattccac |
225 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29607600 |
caaaccaaataaccgtttcgcttgaatccatgttttgtcatatgagcatcttctgcagttactcaagtgacacataacaaaatggcaatagcaattccac |
29607501 |
T |
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| Q |
226 |
cagttgccaacatctttctccattgcccttggtaagattgtgcaccattctgtgaaacataaaatcataagattc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29607500 |
cagttgccaacatctttctccattgcccttggtaagattgtgcaccattctgtgaaacataaaatcataagattc |
29607426 |
T |
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