View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18631_high_3 (Length: 247)
Name: NF18631_high_3
Description: NF18631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18631_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 7778447 - 7778225
Alignment:
| Q |
17 |
gtttctccatagaaacttcttcattgcagccctcacatttaaactttgcatcaatatcttctaccgttgtgaaagaatctaaagcacttgaaagagtatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7778447 |
gtttctccatagaaacttcttcattgcagccctcacatttaaactttgcatcaatatcttctaccgttgtgaaagaatctaaagcacttgaaagagtatc |
7778348 |
T |
|
| Q |
117 |
tgcattttctatttctagactcaaatcaatcgatggctcattagtgtcggaagatcgaccacagttacaacaccgaagcctgctaaccaaactgcctcca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7778347 |
tgcattttctatttctagactcaaatcaatcgatggctcattagtgtcggaagatcgaccacagttacaacaccgaagcctgctaaccaaactgcctcca |
7778248 |
T |
|
| Q |
217 |
aaaactttctttacagtattatc |
239 |
Q |
| |
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||||||||||||||| ||||||| |
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| T |
7778247 |
aaaactttctttacaatattatc |
7778225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 7767477 - 7767255
Alignment:
| Q |
17 |
gtttctccatagaaacttcttcattgcagccctcacatttaaactttgcatcaatatcttctaccgttgtgaaagaatctaaagcacttgaaagagtatc |
116 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| || |
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| T |
7767477 |
gtttctccatagaaacttcttcgttgcagccctcgcatttaaacttcgcatcaatatcttccaccgtagtgaaagaatctaaagcacttgaaagagtttc |
7767378 |
T |
|
| Q |
117 |
tgcattttctatttctagactcaaatcaatcgatggctcattagtgtcggaagatcgaccacagttacaacaccgaagcctgctaaccaaactgcctcca |
216 |
Q |
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| ||||||||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7767377 |
tacattttctatttctagactcaaatcaatcaatggttcattagtgtcagaagagcgaccacagttgcaacaccgaagcctgctaaccaaactgcctcca |
7767278 |
T |
|
| Q |
217 |
aaaactttctttacagtattatc |
239 |
Q |
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|||||||||||||| ||||||| |
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| T |
7767277 |
aaaactttctttacgatattatc |
7767255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 7773612 - 7773390
Alignment:
| Q |
17 |
gtttctccatagaaacttcttcattgcagccctcacatttaaactttgcatcaatatcttctaccgttgtgaaagaatctaaagcacttgaaagagtatc |
116 |
Q |
| |
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||||||||||||| |||||||| ||||||||||| ||||||||||| || ||||| | ||| ||| | |||||||| ||||||||||||||||||||||| |
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| T |
7773612 |
gtttctccatagacacttcttcgttgcagccctcgcatttaaacttcgcgtcaatgtgttccaccatagtgaaagattctaaagcacttgaaagagtatc |
7773513 |
T |
|
| Q |
117 |
tgcattttctatttctagactcaaatcaatcgatggctcattagtgtcggaagatcgaccacagttacaacaccgaagcctgctaaccaaactgcctcca |
216 |
Q |
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| ||||||||||||||||||| ||||||||| ||||||||||| |||| ||||| | |||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
7773512 |
tacattttctatttctagactaaaatcaatcaatggctcattaatgtcagaagaacaaccacagttacaacaccgaagcatgctaaccaaactacctcca |
7773413 |
T |
|
| Q |
217 |
aaaactttctttacagtattatc |
239 |
Q |
| |
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||||||||||||||| ||||||| |
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| T |
7773412 |
aaaactttctttacaatattatc |
7773390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 12753685 - 12753863
Alignment:
| Q |
17 |
gtttctccatagaaacttcttcattgcagccctcacatttaaactttgcatcaatatcttctaccgttgtgaaagaatctaaagcacttgaaagagtatc |
116 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||| | ||| ||| |||||||||| || || |||||||||| || ||| |
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| T |
12753685 |
gtttctccacagacacttcttcattgcagccctcacatttaagcttagcatcaatgttttccaccattgtgaaagactccaatgcacttgaaatagaatc |
12753784 |
T |
|
| Q |
117 |
tgcattttctatttctagactcaaatcaatcgatggctcattagtgtcggaagatcgaccacagttacaacaccgaagc |
195 |
Q |
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| ||||||||||||||||||||| |||||| | |||||||||||| |||||| || | ||||||||||||||||||| |
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| T |
12753785 |
tacattttctatttctagactcaggtcaatcaacggctcattagtgatggaagagcggctacagttacaacaccgaagc |
12753863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 12816645 - 12816823
Alignment:
| Q |
17 |
gtttctccatagaaacttcttcattgcagccctcacatttaaactttgcatcaatatcttctaccgttgtgaaagaatctaaagcacttgaaagagtatc |
116 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||| | ||| ||| |||||||||| || || |||||||||| || ||| |
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| T |
12816645 |
gtttctccacagacacttcttcattgcagccctcacatttaagcttagcatcaatgttttccaccattgtgaaagactccaatgcacttgaaatagaatc |
12816744 |
T |
|
| Q |
117 |
tgcattttctatttctagactcaaatcaatcgatggctcattagtgtcggaagatcgaccacagttacaacaccgaagc |
195 |
Q |
| |
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| ||||||||||||||||||||| |||||| | ||||||||||| |||||| || | ||||||||||||||||||| |
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| T |
12816745 |
tacattttctatttctagactcaggtcaatcaactgctcattagtgatggaagagcggctacagttacaacaccgaagc |
12816823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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