View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18631_high_4 (Length: 245)
Name: NF18631_high_4
Description: NF18631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18631_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 50675786 - 50675613
Alignment:
| Q |
8 |
gtgagaagaaaagtcatttaaacgaaaatcattgtacaaaggagaaaacattttctactgaaatatcatttgaactagcattgcacacccttataaaatt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50675786 |
gtgagaagaaaagtcatttaaacgaaaatcattgtacaaaggataaaatattttctactgaaatatcatttgaactagcattgcacacccttctaaaatt |
50675687 |
T |
|
| Q |
108 |
caaaacacttgaatgatcatcaatttgcatggccagtaaaattttgacaaaagaatatgccttatatatttcat |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50675686 |
caaaacacttgaatgatcatcaatttgcatggccagtaaaattttgacaaaagaatatgccttatatatttcat |
50675613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 48886017 - 48885871
Alignment:
| Q |
8 |
gtgagaagaaaagtcatttaaacgaaaatcattgtacaaaggagaaaacattttctactgaaatatcatttgaactagcattgcacacccttataaaatt |
107 |
Q |
| |
|
|||| ||| |||| |||||||| || ||||| | |||||||||||||||||||| || |||| ||||||||||||||| ||||| || ||| ||||||| |
|
|
| T |
48886017 |
gtgaaaaggaaagacatttaaaagacaatcactatacaaaggagaaaacattttgtaatgaaccatcatttgaactagcgttgcaaacacttctaaaatt |
48885918 |
T |
|
| Q |
108 |
caaaacacttgaatgatcatcaatttgcatggccagtaaaattttga |
154 |
Q |
| |
|
|| |||||||||||||| ||||||||||||| |||| ||||||||| |
|
|
| T |
48885917 |
cacaacacttgaatgattgtcaatttgcatgggcagtcaaattttga |
48885871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 25049054 - 25048984
Alignment:
| Q |
74 |
catttgaactagcattgcacacccttataaaattcaaaacacttgaatgatcatcaatttgcatggccagt |
144 |
Q |
| |
|
||||| |||||| |||||| |||| | ||||||||||||||||||||| ||||||| ||||||||| |||| |
|
|
| T |
25049054 |
catttaaactagtattgcaaacccctctaaaattcaaaacacttgaattatcatcattttgcatggtcagt |
25048984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 45245989 - 45245908
Alignment:
| Q |
42 |
tacaaaggagaaaacattttctactgaaatatcatttgaac--tagcattgcacacccttataaaattcaaaacacttgaat |
121 |
Q |
| |
|
|||||| ||||||||||| |||| |||| ||||||||||| |||||| ||| |||||| ||||||||||| || |||||| |
|
|
| T |
45245989 |
tacaaaagagaaaacattctctaatgaaccatcatttgaactatagcatggcaaacccttctaaaattcaaatcatttgaat |
45245908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University