View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18631_high_6 (Length: 227)
Name: NF18631_high_6
Description: NF18631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18631_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 33899561 - 33899368
Alignment:
| Q |
9 |
cgaagaatattaagaccctgctggggaaatccacagttaacatatcacgaggagtcaaggacaatgagttccaggtaaccacatctcaaacaaccaaatc |
108 |
Q |
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|||| |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33899561 |
cgaaaaatattcagaccctgccggggaaatccatagttaacatatcacgaggagtcaaggacaatgagttccaagtaaccacatctcaaacaaccaaatc |
33899462 |
T |
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| Q |
109 |
atcaaaaacatatctcgcaccctcaacgcatttacatttgccacaagcatgaatcaatgcattgccaatgaaaacatcagacaataccccacac |
202 |
Q |
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| T |
33899461 |
atcaaaaacatatctcgcaccctcaacgcatttacatttgccacaagcatgaatcaatgcattgccaatgaaaacatcagacaataccccacac |
33899368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 34637300 - 34637400
Alignment:
| Q |
85 |
aaccacatctcaaacaaccaaatcatcaaaaacatatctcgcaccctcaacgcatttacatttgccacaagcatgaatcaatgcattgccaatgaaaaca |
184 |
Q |
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||||||||||| |||||||| ||||||||||||| ||| |||||||||||||||||||||| ||| | |||||||||||||||||||||| ||||||| |
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| T |
34637300 |
aaccacatctctaacaaccatatcatcaaaaacacgtctttcaccctcaacgcatttacatttaccatatgcatgaatcaatgcattgccaacgaaaaca |
34637399 |
T |
|
| Q |
185 |
t |
185 |
Q |
| |
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| |
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|
| T |
34637400 |
t |
34637400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 29056609 - 29056689
Alignment:
| Q |
83 |
gtaaccacatctcaaacaaccaaatcatcaaaaacatatctcgcaccctcaacgcatttacatttgccacaagcatgaatc |
163 |
Q |
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| T |
29056609 |
gtaaccacatctctaacaagcaaatcatcaaaaacaaatctgccaccctcaacgcatttacatttaccataagtatgaatc |
29056689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 29504096 - 29503991
Alignment:
| Q |
66 |
aggacaatgagttccaggtaaccacatctcaaacaaccaaatcatcaaaaacatatctcgcaccctcaacgcatttacatttgccacaagcatgaatcaa |
165 |
Q |
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||||||||| | | || |||||||| |||| |||||||||||||||||||||| ||||| ||||||||| |||||||||| ||| | |||||||||| |
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| T |
29504096 |
aggacaatgcgcttcaagtaaccacgtctctaacaaccaaatcatcaaaaacacgtctcgtaccctcaacaaatttacatttaccataggcatgaatcag |
29503997 |
T |
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| Q |
166 |
tgcatt |
171 |
Q |
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|||||| |
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| T |
29503996 |
tgcatt |
29503991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 67 - 202
Target Start/End: Original strand, 13794788 - 13794923
Alignment:
| Q |
67 |
ggacaatgagttccaggtaaccacatctcaaacaaccaaatcatcaaaaacatatctcgcaccctcaacgcatttacatttgccacaagcatgaatcaat |
166 |
Q |
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||||||||| ||||| ||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||||| ||| | |||||||| ||| |
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| T |
13794788 |
ggacaatgaattccaagtaaccacatctctagcaaccaaatcatcaaaaacacgtctcgcaccctcaacacatttacatttaccataggcatgaatgaat |
13794887 |
T |
|
| Q |
167 |
gcattgccaatgaaaacatcagacaataccccacac |
202 |
Q |
| |
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|||||||||||| |||||||||||| ||||||||| |
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|
| T |
13794888 |
gcattgccaatggaaacatcagacatcaccccacac |
13794923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 202
Target Start/End: Complemental strand, 28742346 - 28742228
Alignment:
| Q |
84 |
taaccacatctcaaacaaccaaatcatcaaaaacatatctcgcaccctcaacgcatttacatttgccacaagcatgaatcaatgcattgccaatgaaaac |
183 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||| ||||| |
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| T |
28742346 |
taaccacatctctaacaaccaaatcatcaaaaacacgtctcgcaccctcaacacatttacatttaccataagcatgaatcaacgcattgccaacaaaaac |
28742247 |
T |
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| Q |
184 |
atcagacaataccccacac |
202 |
Q |
| |
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|||||||| ||||||||| |
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| T |
28742246 |
atcagacatcaccccacac |
28742228 |
T |
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