View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18631_low_1 (Length: 844)
Name: NF18631_low_1
Description: NF18631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18631_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 778; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 18 - 827
Target Start/End: Original strand, 50443935 - 50444744
Alignment:
| Q |
18 |
ctttagttccaaaacgtcgaattcgacacattaaaggacctcagtatattaaatgctagtaactcaagtagcaatatagacataactttgcacgatcaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50443935 |
ctttagttccaaaacgtcgaattcgacacattaaaggacctcagtatattaaatgctagtaactcaagtagcaatatagacataactttgtacgatcaac |
50444034 |
T |
|
| Q |
118 |
atatatgagaaactcaactatataccgcacgcgacaaagaaatattgtcctagtaaattgcttgtagaatatacttttataatgcatgaatacaaaccga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50444035 |
atatatgagaaactcaactatataccgcacgcgacaaagaaatattgtcctagtaaattgcttgtagaatatacttttataatgcatgaatacaaaccga |
50444134 |
T |
|
| Q |
218 |
aaattagaggaagagaaaatagcataccgatccataccacagagcatggtatacagttccacaacaacctgcaattcaacaacagagaggtgaataaagc |
317 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
50444135 |
aaattagaggaagagaaaacagcataccgatccataccacagagcatggtatacagttccacaacaacctgcgattcaacaacagagaggtgaataaatc |
50444234 |
T |
|
| Q |
318 |
accattgataactagatagatattagggttcgcaagcttgggctccataaattatcaaaatccttaaagaagcaaacaaaatttcatgctgaactctgaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50444235 |
accattgataactagatagatattagggttcgcaagcttgggctccataaattatcaaaatccttaaagaagcaaacaaaatttcatgctgaactctgaa |
50444334 |
T |
|
| Q |
418 |
aacagataatttgtcaagattttaaacaaatacttgttaaagtatagatatagtcaaaagattatttttacaaacttgcccctttagttaagagtgcaac |
517 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50444335 |
aacagataatttgtcaagattttaaacaaatacttgttaaagtatagatatagtcaaaagattatttttacaaacttgcccctttagttaagagtgcaac |
50444434 |
T |
|
| Q |
518 |
ttaccctgtccaatttgttctcgaattgtcaaatcctcccacaaaatttcataatcaaagcaatcattgtccgcgtccactttactgctgacagcaccac |
617 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
50444435 |
ttaccctgtccaatttgttctcgaattgtcaaatcctcccacaaaatttcataatcaaagcaatcattgtctgcgtccactttactactgacagcaccac |
50444534 |
T |
|
| Q |
618 |
tgccagcacttccgcagctgctggcactacttgtgctgttaacattataggaggaagaacgggataatgaagcctcattattagtaggacgattactttc |
717 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50444535 |
tgccagcacttccgcagctgctggcactacttgtgctgttaacattataggaggaagaacgggataatgaagcctcattattagtagggcgattactttc |
50444634 |
T |
|
| Q |
718 |
accagcctggttttcgtgcttcaagccagaagaaataatcttttgattaactgactcattttcttgatcattctgcctccacagctcagcagcacgaacg |
817 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50444635 |
accagcctggttttcgtgcttcaagccagaagaaataatcttttgattaactgactcattttcttgatcattctgcctccacggctcagcagcacgaacg |
50444734 |
T |
|
| Q |
818 |
ttccttgcct |
827 |
Q |
| |
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|||||||||| |
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|
| T |
50444735 |
ttccttgcct |
50444744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 12978757 - 12978818
Alignment:
| Q |
230 |
gagaaaatagcataccgatccataccacagagcatggtatacagttccacaacaacctgcaa |
291 |
Q |
| |
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||||||| | ||||| |||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
12978757 |
gagaaaagaacatactgatccataccacagagcatgatatacagttccacaagaacctgcaa |
12978818 |
T |
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