View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18631_low_3 (Length: 439)
Name: NF18631_low_3
Description: NF18631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18631_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 14 - 428
Target Start/End: Complemental strand, 24145791 - 24145379
Alignment:
| Q |
14 |
ttctctcaatatcctctctattcaaaatttcgaatgatattaaaattcaatccgaagtgtcggtgctgcatagctgtagtaaacgcaaaagggaaatgtt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24145791 |
ttctctcaatatcctctctattcaaaatttcgaatgatattaaaattcaatccgaagtgtcggtgctgcatagctgtagtaaacgcaaaagggaaatgtt |
24145692 |
T |
|
| Q |
114 |
acctcatggactactgctgctgcttcatttccagtttgaactatatccttcaactctgatggtacggaaacatcattaatgtttccattggcaaggtcta |
213 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24145691 |
acctcatggactactgctgatgcttcatttccagtttgaactttatccttcaactctgatggtacggaaacatcattaatgtttccattggcaaggtcta |
24145592 |
T |
|
| Q |
214 |
gcaaaaactccgctggattcatagaaataaccggtgaacatcctatagattggaagtaattcattgattctgatgcttttccaaagtaaagcgaactccc |
313 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24145591 |
gcaaaaactccgctggattcatagaaataagcggtgaacatcctatagattggaagtaattcattgattctgatgcttttccaaagtaaagcgaactccc |
24145492 |
T |
|
| Q |
314 |
tttcccaagaaggatcaacttgtcaaatttgtgaaagagtctacttgatggttggtgaattgttgtcactactgtttttccagcctaccatatttaatta |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24145491 |
tttcccaagaaggatcaacttgtcaaatttgtgaaagagtctacttgatggttggtgaattgttgtcactactgtttttccagcctaccata--taatta |
24145394 |
T |
|
| Q |
414 |
gcaggttagtgatga |
428 |
Q |
| |
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| |||||||| |||| |
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| T |
24145393 |
gtaggttagtcatga |
24145379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 133 - 404
Target Start/End: Complemental strand, 24127343 - 24127072
Alignment:
| Q |
133 |
ctgcttcatttccagtttgaactatatccttcaactctgatggtacggaaacatcattaatgtttccattggcaaggtctagcaaaaactccgctggatt |
232 |
Q |
| |
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||||| |||||||| |||| ||| |||||| |||||| |||||||| ||||||||||| || |||||||| |||||||||||||||||||| |||||||| |
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| T |
24127343 |
ctgctgcatttccaatttgcactttatcctccaactccgatggtacagaaacatcatttatatttccattagcaaggtctagcaaaaactctgctggatt |
24127244 |
T |
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| Q |
233 |
catagaaataaccggtgaacatcctatagattggaagtaattcattgattctgatgcttttccaaagtaaagcgaactccctttcccaagaaggatcaac |
332 |
Q |
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||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
24127243 |
catggaaataagcggtgaacatcctatagattgaaagtaattcatcacttctgatgcttttccaaagtaaagcaaactcccttttccaagaaggatcaac |
24127144 |
T |
|
| Q |
333 |
ttgtcaaatttgtgaaagagtctacttgatggttggtgaattgttgtcactactgtttttccagcctaccat |
404 |
Q |
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| T |
24127143 |
ttgtcaaatttgtgaaagagtctacttgatggttggtgaattgttgtcactactgtttttccagcctaccat |
24127072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 165 - 379
Target Start/End: Original strand, 43532008 - 43532222
Alignment:
| Q |
165 |
aactctgatggtacggaaacatcattaatgtttccattggcaaggtctagcaaaaactccgctggattcatagaaataaccggtgaacatcctatagatt |
264 |
Q |
| |
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|||||||||||||| |||| |||| | ||||||||||| |||||||||| |||||||| ||||| ||||| | ||| | || || |||||| || |
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| T |
43532008 |
aactctgatggtacagaaatatcaatcatgtttccatttgcaaggtctaataaaaactctgctgggttcatggtaatgagaggattgcaccctataagtt |
43532107 |
T |
|
| Q |
265 |
ggaagtaattcattgattctgatgcttttccaaagtaaagcgaactccctttcccaagaaggatcaacttgtcaaatttgtgaaagagtctacttgatgg |
364 |
Q |
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|||||| | ||||| |||||||||||||||||||||||| | ||||||| || | |||||||||||| ||||| |||||||| ||||| |||||||| |
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| T |
43532108 |
tgaagtagtccattgcttctgatgcttttccaaagtaaagtaagttcccttttcccaaaaggatcaacttatcaaacttgtgaaaaagtctgcttgatgg |
43532207 |
T |
|
| Q |
365 |
ttggtgaattgttgt |
379 |
Q |
| |
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||| || |||||||| |
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| T |
43532208 |
ttgatggattgttgt |
43532222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 378
Target Start/End: Original strand, 43525571 - 43525625
Alignment:
| Q |
324 |
aggatcaacttgtcaaatttgtgaaagagtctacttgatggttggtgaattgttg |
378 |
Q |
| |
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||||||||||||||||||||||||||||||| ||| ||||| || || ||||||| |
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| T |
43525571 |
aggatcaacttgtcaaatttgtgaaagagtccactagatggctgatggattgttg |
43525625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 400
Target Start/End: Complemental strand, 2694380 - 2694202
Alignment:
| Q |
218 |
aaactccgctggattcatagaaataaccggtgaacatcctatagattggaagtaattcattgattctgatgcttttccaaagtaaagcgaactccctttc |
317 |
Q |
| |
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|||||| ||||||||||| | ||||| ||| ||||||||||| |||| |||| |||| || | |||||||||| ||| ||||| | |||||||| |
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| T |
2694380 |
aaactctgctggattcatggcaataaatggtaaacatcctataaattgaaagttattcttttctcatgatgcttttacaacgtaaatcaaactccct--- |
2694284 |
T |
|
| Q |
318 |
ccaagaaggatcaacttgtcaaatttgtgaaagagtctacttgatggttggtgaattgttgtcactactgtttttccagccta |
400 |
Q |
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|| ||||||||||||| | ||| ||||||||||||| ||||||| ||||||||||||||||| || |||| ||| |||| |
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| T |
2694283 |
-cataaaggatcaacttgccgtattattgaaagagtctacatgatggtcggtgaattgttgtcactgctattttaccatccta |
2694202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 24252462 - 24252530
Alignment:
| Q |
248 |
tgaacatcctatagattggaagtaattcattgattctgatgcttttccaaagtaaagcgaactcccttt |
316 |
Q |
| |
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|||||||||| |||||||| | | || |||| || |||||||||||||||||||||| | |||||||| |
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| T |
24252462 |
tgaacatcctttagattggtactgatggattgtttatgatgcttttccaaagtaaagcaagctcccttt |
24252530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 316
Target Start/End: Complemental strand, 18748180 - 18748112
Alignment:
| Q |
248 |
tgaacatcctatagattggaagtaattcattgattctgatgcttttccaaagtaaagcgaactcccttt |
316 |
Q |
| |
|
|||||||||| |||||||| | | || |||| || |||||||||||||||||||||| | |||||||| |
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|
| T |
18748180 |
tgaacatcctttagattggtactgatggattgtttatgatgcttttccaaagtaaagcaagctcccttt |
18748112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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