View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18632_high_13 (Length: 311)
Name: NF18632_high_13
Description: NF18632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18632_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 22 - 301
Target Start/End: Original strand, 571880 - 572161
Alignment:
| Q |
22 |
aagggaacgatgttgtcagagatgagaaggagttagcgatggagacaagagagccttcagtggagtagatcgaaagagtgagatgtaagtttgggatatt |
121 |
Q |
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| T |
571880 |
aagggaacgatgttgcccgagttgagaaggagttagcgatggagacaagagagccttcagtggagtagatcgagagagtgagatgtaagtttgggatatt |
571979 |
T |
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| Q |
122 |
agggtttcaatggnnnnnnnnnnnnnnnnnnnnnnnaagttgaatgaattggtattgagttttccgatacttttttcttaaaaga--nnnnnnnncatta |
219 |
Q |
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| T |
571980 |
agggtttcaatgggagagagatgaacgagagagagaaagttgaatgaattggtattgagttttccgatacttttttcttaaaagattttttttttcattt |
572079 |
T |
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| Q |
220 |
aaattaataattaatatatcaattgtgacagaaaattaaataacattccttcataacagtggcgccaatattcccgcctttg |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
572080 |
aaattaataattaatatatcaattgtgacagaaaattaaataacattccgtcataacagtggcaccaatattcccgcctttg |
572161 |
T |
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