View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18632_high_16 (Length: 268)

Name: NF18632_high_16
Description: NF18632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18632_high_16
NF18632_high_16
[»] chr5 (4 HSPs)
chr5 (13-250)||(36848110-36848347)
chr5 (20-226)||(36859535-36859748)
chr5 (13-250)||(6162493-6162738)
chr5 (13-71)||(6163421-6163479)
[»] chr3 (3 HSPs)
chr3 (13-250)||(46521796-46522048)
chr3 (13-157)||(49881399-49881543)
chr3 (185-246)||(49881548-49881609)
[»] chr1 (1 HSPs)
chr1 (13-246)||(18135371-18135609)
[»] chr6 (8 HSPs)
chr6 (147-250)||(6774682-6774783)
chr6 (147-250)||(6679503-6679604)
chr6 (13-85)||(6679412-6679484)
chr6 (13-85)||(6774802-6774874)
chr6 (14-72)||(6780040-6780098)
chr6 (14-72)||(6668417-6668475)
chr6 (182-250)||(6668545-6668613)
chr6 (182-250)||(6779902-6779970)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 36848347 - 36848110
Alignment:
Q  13 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatcaatgaataaataaatacacctctaattg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36848347 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatcaatgaataaataaatatacctctaattg 36848248  T
Q  113 tttcttctgaactaaatgtatcttgatgtctactctaatatgtctcagaggatttaatagaagttcccttggtttcaggttatacttctgtttcagaaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36848247 tttcttctgaactaaatgtatcttgatgtctactctaatatgtctcagaggatttaataaaagttcccttggtttcaggttatacttctgtttcagaaaa 36848148  T
Q  213 ttgaaggagcagatgtatgcatttttggaatgtatgtc 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36848147 ttgaaggagcagatgtatgcatttttggaatgtatgtc 36848110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 36859748 - 36859535
Alignment:
Q  20 catcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatcaatgaataaataaatacacctcta-attgtttctt 118  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||   |||||||| |||||||||||| ||| ||| ||||||||||    
T  36859748 catcccggaggagaattaccctactgaattatcttatagatcaagagtaagttcaatatattatcaattaataaataaatataccactatattgtttctt 36859649  T
Q  119 ctgaactaaatgtatcttgatgtctac------tctaatatgtctcagaggatttaatagaagttcccttggtttcaggttatacttctgtttcagaaaa 212  Q
    |||||||||||||||||||||||||||      ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  36859648 ctgaactaaatgtatcttgatgtctactctaaatctaatatgtctcggaggatttaatagaagttcccttggtttcatgttatacttctgtttcagaaat 36859549  T
Q  213 ttgaaggagcagat 226  Q
    ||||||||| ||||    
T  36859548 ttgaaggagtagat 36859535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 6162738 - 6162493
Alignment:
Q  13 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatcaatgaataaataaatacacctctaattg 112  Q
    |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||| ||  | |||||    
T  6162738 tggacatcatcccataagagaattaccctgctgaattctcttatagatcaagagtaagttcagtggtttatcaatgaataaatagatatacaaccaattg 6162639  T
Q  113 tttcttctgaactaaatgtatcttgatgtctactctaatatgtc--------tcagaggatttaatagaagttcccttggtttcaggttatacttctgtt 204  Q
     |||||||||||||||||| ||||||||| || ||||| |||||        |||||  ||||||||||||||| || ||||||||||||| ||||||||    
T  6162638 cttcttctgaactaaatgtctcttgatgtatagtctaacatgtctgtattattcagaaaatttaatagaagttctctcggtttcaggttattcttctgtt 6162539  T
Q  205 tcagaaaattgaaggagcagatgtatgcatttttggaatgtatgtc 250  Q
    |||| | |||||||||||||||||||||||||||||||||||||||    
T  6162538 tcagcagattgaaggagcagatgtatgcatttttggaatgtatgtc 6162493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 6163479 - 6163421
Alignment:
Q  13 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagt 71  Q
    ||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||||    
T  6163479 tggacattattccagatgagaattaccctgctgaattctcttatagatcaagagtaagt 6163421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 46521796 - 46522048
Alignment:
Q  13 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatcaatgaataaataaatacacctcta---- 108  Q
    |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| || ||| |||||||| |||||||||||| |||  ||        
T  46521796 tggatatcattccagaggagaattaccctgctgaattctcttatagatcaagagtaagttcagtggattatcaataaataaataaatataccattaccac 46521895  T
Q  109 --attgtttcttctgaactaaatgtatcttgatgtctactctaatatgtctc---------agaggatttaatagaagttcccttggtttcaggttatac 197  Q
      |||| |||||||||||||||||| ||||||||| || ||||||||||||          ||| |||||||||||||||  |||||||||||||||| |    
T  46521896 ctattgcttcttctgaactaaatgtctcttgatgtttattctaatatgtctggattattcaagaagatttaatagaagtttgcttggtttcaggttattc 46521995  T
Q  198 ttctgtttcagaaaattgaaggagcagatgtatgcatttttggaatgtatgtc 250  Q
    ||||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  46521996 ttctgtttcagcagattgaaggagcagatatatgcatttttggaatgtatgtc 46522048  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 49881399 - 49881543
Alignment:
Q  13 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatcaatgaataaataaatacacctctaattg 112  Q
    |||||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||| || |||||||| | |||||||||||||| ||| | |||||    
T  49881399 tggacatcattccagaggaaaattaccctgccgaattctcttatagatcaagagtaagttcagtggtttattattgaataaataaatataccacaaattg 49881498  T
Q  113 tttcttctgaactaaatgtatcttgatgtctactctaatatgtct 157  Q
      ||||| ||||||||| | ||||||||||||||||| |||||||    
T  49881499 catcttcagaactaaatttctcttgatgtctactctattatgtct 49881543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 49881548 - 49881609
Alignment:
Q  185 tttcaggttatacttctgtttcagaaaattgaaggagcagatgtatgcatttttggaatgta 246  Q
    ||||||||||| |||||||||||| | |||||||||| |||| |||||||||||||||||||    
T  49881548 tttcaggttattcttctgtttcagcagattgaaggagtagatatatgcatttttggaatgta 49881609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 18135371 - 18135609
Alignment:
Q  13 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaa-tggtttatcaatgaataaataaatacacctctaatt 111  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||| |||||||| ||   | ||| ||||||||||||||||| |    || | ||||    
T  18135371 tggacatcatccctcaggagaattaccctgctgaattctcttatagagcaagagtatgttttagtggcttatcaatgaataaatata----ccaccaatt 18135466  T
Q  112 gtttcttctgaactaaatgtatcttgatgtctactctaatatgtct--------cagaggatttaatagaagttcccttggtttcaggttatacttctgt 203  Q
      |||||||||||||||||| | ||||||||||| | ||||||| |        |||| ||||||||| ||||||||||||||||||||||| |||||||    
T  18135467 ccttcttctgaactaaatgtctattgatgtctaccccaatatgtatgtattatacagaagatttaatataagttcccttggtttcaggttattcttctgt 18135566  T
Q  204 ttcagaaaattgaaggagcagatgtatgcatttttggaatgta 246  Q
    ||||| | ||||||||||||||| |||||||||||||||||||    
T  18135567 ttcagcatattgaaggagcagatatatgcatttttggaatgta 18135609  T

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Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 6774783 - 6774682
Alignment:
Q  147 ctaatatgtctcagaggatttaatagaagttcccttggtttcaggttatacttctgtttcagaaaattgaaggagcagatgtatgcatttttggaatgta 246  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||    
T  6774783 ctaatatgtctcag--gatttaatagaagttcccttggtttcaggttatacttctgtttcaaaagattgaaggagtagatgtatgcatttttggaatgta 6774686  T
Q  247 tgtc 250  Q
    ||||    
T  6774685 tgtc 6774682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 6679503 - 6679604
Alignment:
Q  147 ctaatatgtctcagaggatttaatagaagttcccttggtttcaggttatacttctgtttcagaaaattgaaggagcagatgtatgcatttttggaatgta 246  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||  | |||||||||| ||||||||||||||||||||||||    
T  6679503 ctaatatgtctcag--gatttaatagaagttcccttggtttcaggttatacttctgtttcaatagattgaaggagtagatgtatgcatttttggaatgta 6679600  T
Q  247 tgtc 250  Q
    ||||    
T  6679601 tgtc 6679604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 6679412 - 6679484
Alignment:
Q  13 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatca 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||    
T  6679412 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgttcagtggtttatca 6679484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 6774874 - 6774802
Alignment:
Q  13 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatca 85  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || || ||||||||||    
T  6774874 tggacatcatcccagaggaaaattaccctactgaattctcttatagatcaagagtatgttcagtggtttatca 6774802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 6780098 - 6780040
Alignment:
Q  14 ggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtc 72  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6780098 ggacatcattccagaggagaattaccctgctgaattctcttatagatcaagagtaagtc 6780040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 6668417 - 6668475
Alignment:
Q  14 ggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtc 72  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6668417 ggacatcactccagaggagaattaccctgctgaattctcttatagatcaagagtaagtc 6668475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 6668545 - 6668613
Alignment:
Q  182 tggtttcaggttatacttctgtttcagaaaattgaaggagcagatgtatgcatttttggaatgtatgtc 250  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  6668545 tggttttaggttattcttctatttcagaagattgaaggagcagatgtatgcatatttgcaatgtatgtc 6668613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 6779970 - 6779902
Alignment:
Q  182 tggtttcaggttatacttctgtttcagaaaattgaaggagcagatgtatgcatttttggaatgtatgtc 250  Q
    |||||| ||||||| ||||| |||||||| ||||||||||| ||||||||||| |||| ||||||||||    
T  6779970 tggttttaggttattcttctatttcagaagattgaaggagcggatgtatgcatatttgcaatgtatgtc 6779902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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