View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18632_high_19 (Length: 254)
Name: NF18632_high_19
Description: NF18632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18632_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 30556606 - 30556846
Alignment:
| Q |
1 |
tgtagtcataatctgagggaagtagcattcattaaatgacaaagnnnnnnnntgctaaattagtagtgcaagcaacatgtgtgtctgtaatagtttaatt |
100 |
Q |
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| T |
30556606 |
tgtagtcataatctgagggaagtagcattcattaaatgacaaagaaaaaaaatgctaaattagtagtgcaagcaacatgtgtgtctgtaatagtttaatt |
30556705 |
T |
|
| Q |
101 |
tcaaaacttgtttagtaatattttgatgaataaaataacaatatagaaatgtcaaacctccgtacaccgtacagaatgcggaatttggcnnnnnnnnnat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30556706 |
tcaaaacttgtttagtaatattttgatgaataaaataacaatatagaaatgtcaaacctccgtacaccgtacagaatgcggaatttggc--tttttttat |
30556803 |
T |
|
| Q |
201 |
tgatgatagtcagaactgtcgatcatcaacttgatgtcttcat |
243 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30556804 |
tgatgataatcagaactgtcgatcatcaacttgatgtcttcat |
30556846 |
T |
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