View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18632_high_3 (Length: 586)
Name: NF18632_high_3
Description: NF18632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18632_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Complemental strand, 13488012 - 13487442
Alignment:
| Q |
1 |
atcaaatcataaaaa-tgtttgactttaatcacaattacttttagcaccggcacttctgaacaaagacatctccggtgtctaacacgtgtaattacattc |
99 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13488012 |
atcaaatcataaaaaatgtttgactttaatcacaattacttttagcaccggcacttctgaacaaaggcatctccggtgtctaacacgtgtaattacattc |
13487913 |
T |
|
| Q |
100 |
aattacgacatttaaaattattatctgtgtcaacatgttagtgttagtgtcggaaccagggtccgtgtttgtgattcataggttggtaatgtagaaaaat |
199 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13487912 |
aattacgacatttcaaattattatcggtgtcaacatgttagtgtcagtgtcggaaccagggtccgtgtttgtgattcataggttggtaatgtagaaaaat |
13487813 |
T |
|
| Q |
200 |
ttaccctaataatcatgtataaaaatgaaactcatctatgcaacactaaacattataacaaaaccaatcaagaatctaaaagatgatgtgaatgaacacg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
13487812 |
ttaccctaataatcatgtataaaaatgaaactcatctatgcaacactaaacattataacaaaaccaatcaagaatcttaaagataatgtgaatgaacacg |
13487713 |
T |
|
| Q |
300 |
taccacaagaatttcatcagtatcccccattaactccttgagtttctcattcaatgtttccgttaacaccgcaattccctcgtcggtgaaattcgtctga |
399 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13487712 |
tacaacaagaatttcatcagtatcccccattaactccttgagtttctcattcaatgtttccgttaacaccgctattccctcgtcggtgaaattcgtctga |
13487613 |
T |
|
| Q |
400 |
aaagaccggttatcggaacgatcaatgttacccatctccaatcccaaacaaaccctaaattcaaaattgcgat-gnnnnnnnaaagcgtgaacgaaatag |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
13487612 |
aaagaccggttatcggaacgatcaatgttacccatctccaatcccaaacaaaccctaaattcaaaactgcgatggtttttttaaagcgtgaacgaaatag |
13487513 |
T |
|
| Q |
499 |
ggttgagtgtatcgatgagaattgcggcgagaatcgaaaagagaggaaaaagaatgaatgattttgaattt |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13487512 |
ggttgagtgtatcgatgagaattgcggcgagaatcgaaaagagaggaaaaagaatgaatgattttgaattt |
13487442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University