View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18632_high_4 (Length: 581)
Name: NF18632_high_4
Description: NF18632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18632_high_4 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 488; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Original strand, 9997869 - 9998432
Alignment:
| Q |
18 |
cctatgacatgaataatgaaaaaatttgtctaagtgttggtgtttgattttgttgtcatttccttgtaaagcaagaaagttgcagcttgtgctaagcact |
117 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
9997869 |
cctatgacatgaataatgataaaattcgtctaagtgttggtgtttgattttgttctcattttcttgtacagcaagaaagttgcagcttgtgctaagcact |
9997968 |
T |
|
| Q |
118 |
ttgttggtgatggtggaacgacaaaaggaatcaatgaggataacacagttgcaaccagacatgaattgtttaccattcacatgccagcttactataactc |
217 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9997969 |
ttgtcggtgatggtggaacaacaaaaggaatcaatgaggataacacagttgcaaacagacatgaattgtttagcattcacatgccagcttactataactc |
9998068 |
T |
|
| Q |
218 |
aatcattaagggtgtctcaaccatcatggtctcttactcaagctggaatggagaaaagatgcacgctaatcgcgatttaatcaccggctttctcaagaac |
317 |
Q |
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||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
9998069 |
aatcattaagggtgtcttaaccgtcatggtctcatactcaagctggaatggagaaaagatgcatgctaatcgcgatttaatcaccggctttcttaagaac |
9998168 |
T |
|
| Q |
318 |
acgctccgtttcaaggtaatattttacctcataacataagcctttgattgcatcaagaatttaatttgtatgcactatatgtataaaaaacgtgacaata |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9998169 |
acgctccgtttcaaggtaatattttacctcataacataagcctttgattgcatcaagagtttaatttgtatgcactatatgtataaaaaacgtgacaata |
9998268 |
T |
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| Q |
418 |
aattataggatgacggtgtaaaataggtggcaatatattattgcataaataattgtatattaacttaaccctaaaattgtttgtttatcaatcatcatat |
517 |
Q |
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| T |
9998269 |
aattataggatgacggtgtaaaataggtggcaatatattattgcataaataattgtatattaacttaaccctaaaattgtttgtttatcaatcatcatat |
9998368 |
T |
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| Q |
518 |
tagtatatgcttaaaattctatgtttccatgcagggttttgtcatatcagattgggagggaatc |
581 |
Q |
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| T |
9998369 |
tagtatatgcttaaaattggatgttttaatgcagggttttgtcatatcagattgggagggaatc |
9998432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 62 - 580
Target Start/End: Original strand, 10003616 - 10004147
Alignment:
| Q |
62 |
tgattttgttgtcatttccttgtaaagcaagaaagttgcagcttgtgctaagcactttgttggtgatggtggaacgacaaaaggaatcaatgaggataac |
161 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
10003616 |
tgattttcttgtcatttccttgtacagcaagaaagttgcagcttgtgctaagcactttgttggtgatggtggaacaacagaaggaatcaatgaggataac |
10003715 |
T |
|
| Q |
162 |
acagttgcaaccagacatgaattgtttaccattcacatgccagcttactataactcaatcattaagggtgtctcaaccatcatggtctcttactcaagct |
261 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||||||||||| |||||||||| |
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| T |
10003716 |
acagttgcaaccagacatgaattgtttagcattcacatgcaagcttactataactcgatcactaaggttgtcttaaccatcatggtctcatactcaagct |
10003815 |
T |
|
| Q |
262 |
ggaatggagaaaagatgcacgctaatcgcgatttaatcaccggctttctcaagaacacgctccgtttcaaggtaatattttacctcata--------aca |
353 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| | |
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| T |
10003816 |
ggaatggagaaaagatgcattctaatcgcgatttagtcaccggctttctcaagaacacgctccatttcagggtaatactttacctcataggccttggatt |
10003915 |
T |
|
| Q |
354 |
taagccttt-----gattgcatcaagaatttaatttgtatgcactatatgtataaaaaacgtgacaataaattataggatgacggtgtaaaataggtggc |
448 |
Q |
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| | ||| |||| |||||||||||| ||| |||| | ||| ||| ||||| |||| ||||||||||||| ||||| |||||||||||||| | |
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| T |
10003916 |
tcatagtttcgaaagattatatcaagaatttattttttatgaattatctgtgtaaaagacgtaacaataaattatactatgactgtgtaaaataggtgac |
10004015 |
T |
|
| Q |
449 |
aatatattattgcataaataattgtatattaacttaaccctaaaattgtttgtttatcaatcatcatattagtatatgcttaaaattctatgtttccatg |
548 |
Q |
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||||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
10004016 |
tatatattatagcataaataattgtatattaacttaagcctgaaattgtttatttatcgatcatcatattagtatatgcttaaaattctatgtttttatg |
10004115 |
T |
|
| Q |
549 |
cagggttttgtcatatcagattgggagggaat |
580 |
Q |
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|||||||||||||||||||||||| ||||||| |
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| T |
10004116 |
cagggttttgtcatatcagattggaagggaat |
10004147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 52 - 345
Target Start/End: Original strand, 9990733 - 9991024
Alignment:
| Q |
52 |
tgttggtgtttgattttgttgtcatttccttgtaaagcaagaaagttgcagcttgtgctaagcactttgttggtgatggtggaacgacaaaaggaatcaa |
151 |
Q |
| |
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|||||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9990733 |
tgttggtgtttgattttgttat--ttttcttgcgcagcaagaaagttgcagcttgtgctaagcactttgttggtgatggtggaacaacaaaaggaatcaa |
9990830 |
T |
|
| Q |
152 |
tgaggataacacagttgcaaccagacatgaattgtttaccattcacatgccagcttactataactcaatcattaagggtgtctcaaccatcatggtctct |
251 |
Q |
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|||| |||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||| || || |||||||||||||| ||| |
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| T |
9990831 |
tgagaataacacagtcgcaaccagacatgaattgcttagcattcacatgccagcttactataactcaattattaaaggcgtgtcaaccatcatggtgtct |
9990930 |
T |
|
| Q |
252 |
tactcaagctggaatggagaaaagatgcacgctaatcgcgatttaatcaccggctttctcaagaacacgctccgtttcaaggtaatattttacc |
345 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||| ||||| | |||||| |
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| T |
9990931 |
tactcaagctggaacggagaaaaaatgcacgctaatcgcgatttaatcaccggttttctcaagaacacacttcgtttcagggtaaaactttacc |
9991024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 52 - 351
Target Start/End: Original strand, 10012264 - 10012561
Alignment:
| Q |
52 |
tgttggtgtttgattttgttgtcatttccttgtaaagcaagaaagttgcagcttgtgctaagcactttgttggtgatggtggaacgacaaaaggaatcaa |
151 |
Q |
| |
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|||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10012264 |
tgttggtgtttgattttgttat--tttccttgcgcagcaagaaagttgcagcttgtgctaagcactttgtcggtgatggtggaacgacaaaaggaatcaa |
10012361 |
T |
|
| Q |
152 |
tgaggataacacagttgcaaccagacatgaattgtttaccattcacatgccagcttactataactcaatcattaagggtgtctcaaccatcatggtctct |
251 |
Q |
| |
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|||| ||||||||||||||| ||||||| || | | | |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||| |
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| T |
10012362 |
tgagaataacacagttgcaaacagacatcaaatctatggcattcacatgccagcttactataactcaattattaagggtgtcgcaaccgtcatgatctct |
10012461 |
T |
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| Q |
252 |
tactcaagctggaatggagaaaagatgcacgctaatcgcgatttaatcaccggctttctcaagaacacgctccgtttcaaggtaatattttacctcataa |
351 |
Q |
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| T |
10012462 |
tactcaagcttgaatggacacaaaatgcatgctaatcacgatttagtcaccggctttctcaagaacaagctccgtttcagggtaatactttatctcataa |
10012561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 487 - 580
Target Start/End: Original strand, 9991183 - 9991276
Alignment:
| Q |
487 |
cctaaaattgtttgtttatcaatcatcatattagtatatgcttaaaattctatgtttccatgcagggttttgtcatatcagattgggagggaat |
580 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9991183 |
cctaaaattgtttgtttatcaatcatcatattagtatacgcctaaaattatatgttttcatgcagggttttgtcatatcagattgggagggaat |
9991276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 516 - 580
Target Start/End: Original strand, 10012693 - 10012757
Alignment:
| Q |
516 |
attagtatatgcttaaaattctatgtttccatgcagggttttgtcatatcagattgggagggaat |
580 |
Q |
| |
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|||||||||||||||||||||| ||||| | | |||||||| ||||||||||||||||||||| |
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| T |
10012693 |
attagtatatgcttaaaattctttgttttcctttagggttttaccatatcagattgggagggaat |
10012757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 336
Target Start/End: Complemental strand, 33347904 - 33347793
Alignment:
| Q |
225 |
aagggtgtctcaaccatcatggtctcttactcaagctggaatggagaaaagatgcacgctaatcgcgatttaatcaccggctttctcaagaacacgctcc |
324 |
Q |
| |
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|||||||| ||||||| ||||| |||||||| || ||||||||||| || ||||| ||| ||| ||| |||| || ||||| ||||| ||||| |||| |
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| T |
33347904 |
aagggtgtggcaaccattatggtatcttactcgagttggaatggagataaaatgcatgctcatcacgacctaattactggcttcctcaaaaacactctcc |
33347805 |
T |
|
| Q |
325 |
gtttcaaggtaa |
336 |
Q |
| |
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|||| |||||| |
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| T |
33347804 |
atttccaggtaa |
33347793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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