View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18632_high_8 (Length: 443)
Name: NF18632_high_8
Description: NF18632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18632_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 45 - 424
Target Start/End: Complemental strand, 25007784 - 25007405
Alignment:
| Q |
45 |
gagtgaattgcacaaaatgtataaaatctatctatagtataagataaactaaaatatgattttttcgacaaacagaatcatagccgcaaaggagaaagga |
144 |
Q |
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| T |
25007784 |
gagtgaattgcacaaaatgtataaaatctatctatagtataagataaactaaaatgtgattttttcgacaaacagaatcatagccgtaaaggagaaagga |
25007685 |
T |
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| Q |
145 |
aggaatttgggaggacttaaagatgatggaacatgcttggccacaaatcctattgacagatgctggaggtgtgacccaaattgggctaacaaccgccaaa |
244 |
Q |
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| T |
25007684 |
aggaacttgggaggacttaaagatgatggaacatgcttggccacaaatcctattgacagatgctggaggtgtgacccaaattgggctaacaaccgccaaa |
25007585 |
T |
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| Q |
245 |
agctagcagattgtgtccaaggattcggaagaaacactcgcggaggtcaaggcggtccaatctatgttgtcaccgatccttctgatgacgacatgatgga |
344 |
Q |
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| T |
25007584 |
agctagcagattgtgtccaaggattcggaagaaacacccgcggaggtcaaggcggtccaatctatgttgtcaccgatccttctgatgacgatatgatgaa |
25007485 |
T |
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| Q |
345 |
cccaaaacccggaaccctccgttacgcggtgacacgtaacggttccctttggatcacattcgctcgcagcatggccatca |
424 |
Q |
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| T |
25007484 |
cccaaaacccggaaccctccgttacgcggtgacacgtaacggttccctttggatcacattcgctcgcagcatggccatca |
25007405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 25007829 - 25007799
Alignment:
| Q |
14 |
atcattcttttacaaaaaatgcaattcactc |
44 |
Q |
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| T |
25007829 |
atcattcttttacaaaaaatgcaattcactc |
25007799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 275
Target Start/End: Original strand, 16910948 - 16911047
Alignment:
| Q |
176 |
catgcttggccacaaatcctattgacagatgctggaggtgtgacccaaattgggctaacaaccgccaaaagctagcagattgtgtccaaggattcggaag |
275 |
Q |
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| T |
16910948 |
catgcatggctacaaaccccattgacaggtgttggaggtgtgatcctaactgggcaaacaaccgccagaagcttgcagattgtgtgaaaggtttcggaag |
16911047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 275
Target Start/End: Original strand, 16915353 - 16915452
Alignment:
| Q |
176 |
catgcttggccacaaatcctattgacagatgctggaggtgtgacccaaattgggctaacaaccgccaaaagctagcagattgtgtccaaggattcggaag |
275 |
Q |
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| T |
16915353 |
catgcatggccacaaaccccattgataggtgttggaggtgtgatcctaactgggcaaacaaccgcaagaagcttgcagattgtgtgcaaggttttggaag |
16915452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 44708943 - 44709019
Alignment:
| Q |
184 |
gccacaaatcctattgacagatgctggaggtgtgacccaaattgggctaacaaccgccaaaagctagcagattgtgt |
260 |
Q |
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| T |
44708943 |
gccacaaatcccatcgatagttgctggagatgtgatccaaattgggaaaagaatcgcaagaagctagcagattgtgt |
44709019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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