View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18632_low_11 (Length: 412)
Name: NF18632_low_11
Description: NF18632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18632_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 22046971 - 22047364
Alignment:
| Q |
1 |
tatggtaacttcaatgggctgaattcatctggctggacatcaagggcaaaatgattgtcaccaaggtatgtcattaaaagaagtttgttaccattaattt |
100 |
Q |
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| T |
22046971 |
tatggtaacttcaatgggctgaattcatctagctggacatcaaggccaaaacgattgtcaccaaggtatgtcattaaaagaagtttgttaccattaattc |
22047070 |
T |
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| Q |
101 |
caaataattgtctcaattcaatccatcctttagtgattagaggaaaatgaaaacttaagttgaaatcgacatcctttgtgttgcctctcctatcgatgat |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||| |
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| T |
22047071 |
caaataattgtctcaattcagtccatcctttagtgattagaggaaaatgaaaacttaagttgaaatccacatcctatgt--tgcctctcctatcgatgat |
22047168 |
T |
|
| Q |
201 |
agttaatcttagaccaagctcataataatgttctttaacaaatttagtgtcgaactctccatatggctgcaacatgcaaatgtaagttgattttaatatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22047169 |
agttaatcttagaccaagctcataataatgttctttaacaaatttagggtcgaactctccatatggctgcaacatgcaaatgtaagttggttttaatatg |
22047268 |
T |
|
| Q |
301 |
aggatgtatatgatcgaaatgtaactacataaattcaatgtacatgatgtaaaaagataaatactttattgtggtaaaagagaatgaacatgaatc |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22047269 |
aggatgtatatgatcgaaatgtaactacataaattcaatgtacatgatgtaaaaagataaatactttattgtggtaaaagagaatgaacatgaatc |
22047364 |
T |
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