View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18632_low_12 (Length: 373)
Name: NF18632_low_12
Description: NF18632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18632_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 360
Target Start/End: Complemental strand, 32404010 - 32403670
Alignment:
| Q |
20 |
aactgaaccaccatgaactattgaagcagcaactagagggtctttaagaagattgcacaatctctcgaagtggtgcttatttattattcttgagagtgcc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32404010 |
aactgaaccaccatgaactattgaagcagcaactagagggtctttaagaagattgcacaatctctcgaagtggtgcttatttattattcttgagagtgcc |
32403911 |
T |
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| Q |
120 |
tttgactccatcatgttgtcaccataaaattttctcatgaacttctttaatagttctatctagagnnnnnnnnnnnnnncttactaagttactattagaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32403910 |
tttgactccatcatgttgtcaccataaaattttctcatgaacttctttaatagttctatctagagaaaaaaccaaaaaacttactaagttactattagaa |
32403811 |
T |
|
| Q |
220 |
aattaacagttcagaataaataacagtttataatgtacaatgaatataccaattcggatgagtacttctcctcaacaagcaaataatcgattgctataca |
319 |
Q |
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|| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32403810 |
aactaacagttcagaataaataacagtttataatgtacagtgaatataccaattcagatgagtacttctcctcaacaagcaaataatcgattgctataca |
32403711 |
T |
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| Q |
320 |
tgcctgtccactgcagactccccactttgctcctactattc |
360 |
Q |
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| T |
32403710 |
tgcctgtccactgcagactccccactttgctcctactattc |
32403670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 43304543 - 43304691
Alignment:
| Q |
23 |
tgaaccaccatgaactattgaagcagcaactagagggtctttaagaagattgcacaatctctcgaagtggtgcttatttattattcttgagagtgccttt |
122 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
43304543 |
tgaaccaccatgaactattgaagcagcaaatagagggtctttaagaagattgcacaatctctcaaagtggtgcttatttattattcttgagagtgccgtt |
43304642 |
T |
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| Q |
123 |
gactccatcatgttgtcaccataaaattttctcatgaacttctttaata |
171 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43304643 |
gacttcatcatgttgtcaccataaaattttctcatgaacttcttcaata |
43304691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 269 - 360
Target Start/End: Original strand, 43304699 - 43304790
Alignment:
| Q |
269 |
caattcggatgagtacttctcctcaacaagcaaataatcgattgctatacatgcctgtccactgcagactccccactttgctcctactattc |
360 |
Q |
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|||||| ||||||| |||||||| |||||||||||||||||||||||||||||| |||||| | || ||||||||||||||||||||||||| |
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| T |
43304699 |
caattcagatgagtgcttctccttaacaagcaaataatcgattgctatacatgcttgtccagtacatactccccactttgctcctactattc |
43304790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 6659970 - 6660097
Alignment:
| Q |
23 |
tgaaccaccatgaactattgaagcagcaactagagggtctttaagaagattgcacaatctctcgaagtggtgcttatttattattcttgagagtgccttt |
122 |
Q |
| |
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|||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||| | || |
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| T |
6659970 |
tgaaccaccaggaactattgaagcagcaaatagaaggtctttaagaagattgcacaatctctcaaagtggtgatt-tttattattcttgaaagtgtcgtt |
6660068 |
T |
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| Q |
123 |
gactccatcatgttgtcaccataaaattt |
151 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
6660069 |
gacttcatcatgttgtcaccataaaattt |
6660097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 6664515 - 6664591
Alignment:
| Q |
284 |
cttctcctcaacaagcaaataatcgattgctatacatgcctgtccactgcagactccccactttgctcctactattc |
360 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||| | || ||||||||||||||||||||||||| |
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| T |
6664515 |
cttctcctttacaagcaaataatcgattgctatacatgcttgtccagtacatactccccactttgctcctactattc |
6664591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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