View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18632_low_16 (Length: 285)
Name: NF18632_low_16
Description: NF18632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18632_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 30556560 - 30556297
Alignment:
| Q |
1 |
ttagctatgagctaggtacatctagttctttactttctacacctcctatatataatataagaaaggagaaacttaattagcaatttcattcaaagaaacc |
100 |
Q |
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| T |
30556560 |
ttagctatgagctaggtacatctagttctttactttctacacctcctatatataatataagaaaggagaaacttaattagcaatttcattcaaagaaacc |
30556461 |
T |
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| Q |
101 |
tctcatggcggaaggagaacaaagatctctcgaagaaaccccaacatgggctgtctcagtttgttgcttctttgttcttgttatatcattgatcattgaa |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30556460 |
tctcatggcggaaggagaacaaagatctcttgaagaaaccccaacatgggctgtctcagtttgttgcttctttgttcttgttatatcattgatcattgaa |
30556361 |
T |
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| Q |
201 |
ggaggtctccacaaattggctgaggtaattataaat---taatatattaagtagtgcatttatg |
261 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30556360 |
ggaggtctccacaaattggctgaggtaattataaattactaatatattaagtagtgcatttatg |
30556297 |
T |
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