View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18632_low_18 (Length: 260)
Name: NF18632_low_18
Description: NF18632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18632_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 37979142 - 37979361
Alignment:
| Q |
23 |
aaaaactgattataaagaaaatagaaccatgacccaccttccttccttgtgttagacgaagcttcgggtactcttttaacacggattttacttgctgtgc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37979142 |
aaaaactgattataaagaaaatagaaccatgacccacctttcttccttgtgttagacgaagcttcgggtactcttttaacacggattttacttgctgtgc |
37979241 |
T |
|
| Q |
123 |
caattcaacccatctctgtgtataataaacaactttgagttagatcataaatattctagcatctaaaataaacaacactgattaattgctttaaacttat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37979242 |
caattcaacccatctctgtgtataataaacaactttgagttagatcataaatattctagcatctaaaataaacaacactgattaattgctttaaacttat |
37979341 |
T |
|
| Q |
223 |
aatataccttttcatcaaca |
242 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37979342 |
aatataccttttcatcaaca |
37979361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University