View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18632_low_19 (Length: 257)
Name: NF18632_low_19
Description: NF18632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18632_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 9194547 - 9194301
Alignment:
| Q |
1 |
gaggtgtaggatttcagccagctcgataacaaaacacaactttgttgggaaaacttgtttggagtcttaagcaatcagacacaaaattatgggtgtctat |
100 |
Q |
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| T |
9194547 |
gaggtctaggatttcagccagcatgataacaaaacacaactttgttgggaaaacttgtttgttgtcttaagcaatcagacacaaaattatgggtgtctat |
9194448 |
T |
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| Q |
101 |
ccttgccgataaatacttaaaagagtgtaatatatttatataaaaagcaaggactgttcacctatttggaatgcaatcctcaagtctcttgatgtgttaa |
200 |
Q |
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| T |
9194447 |
ccttgccaataaatacttaaaagagggtaaaatgtttatatacaaatcaaggacggttcgccaatttggaatgcaatcctcaagtctcttgatattttaa |
9194348 |
T |
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| Q |
201 |
aagatggtttcaccaaattttttggagatggagatacaaatatgtgg |
247 |
Q |
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| T |
9194347 |
aagatggtttcgcctaaaaaattgttgatggagatacaaatatgtgg |
9194301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 37500991 - 37501201
Alignment:
| Q |
1 |
gaggtgtaggatttcagccagctcgataacaaaacacaactttgttgggaaaacttgtttggagtcttaagcaatcagacacaaaattatgggtgtctat |
100 |
Q |
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| T |
37500991 |
gaggtctaggagttcatccaactcgactacaaaacacaactttgttgggaaaacttgtttggagtttcgtgcaatcagacaagaagttatgggtgtctat |
37501090 |
T |
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| Q |
101 |
ccttgccgataaatacttaaaagagtgtaatatatttatataaaaagcaaggac-tgttcacctatttggaatgcaatcctcaagtctcttgatgtgtta |
199 |
Q |
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| T |
37501091 |
ccttgctgataaatacttgaaa-aggggaatatgtttttagaaaaagcaaaaacaggttcacctatttggaatgcaatcctcaaaactctttatgtgtta |
37501189 |
T |
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| Q |
200 |
aaagatggtttc |
211 |
Q |
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| T |
37501190 |
gaagatggtttc |
37501201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 8989260 - 8989346
Alignment:
| Q |
98 |
tatccttgccgataaatacttaaaagagtgtaatatatttatataaaaagcaaggac-tgttcacctatttggaatgcaatcctcaa |
183 |
Q |
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| T |
8989260 |
tatccttgccgataaatacttgaaagagggtaatatattttcagaaaaagcaaagacatgtttacctattaggtattcaatcatcaa |
8989346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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