View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18632_low_22 (Length: 249)
Name: NF18632_low_22
Description: NF18632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18632_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 4633863 - 4634099
Alignment:
| Q |
1 |
aaaagcatcagttagtgctttcattcctttctgtacattgcacctacaaaagcatcagtcacttatggtgttcaagttaaatgccaaccatcttatatgc |
100 |
Q |
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| T |
4633863 |
aaaagcatcaattagtgattttattcatttctgtacattgcacctacaaaagcatcagtcacttctggtgttcaagttaaatgccaaccatcttatatgc |
4633962 |
T |
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| Q |
101 |
ctagtcatactttctattcacgcagttcaataatagacatcaactatggtttttgagccggcagcggtacttagcctaattgtttacatcaaaacatgac |
200 |
Q |
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| T |
4633963 |
ctagtcatactttctattcacgcagttcaataatagacatcaactatggtttttgagccggcagcgctacttagcctaattgtttacatcaaaacatgac |
4634062 |
T |
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| Q |
201 |
agtagaatttgt-atgctcatcaaatcatcaatagta |
236 |
Q |
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| T |
4634063 |
agtagaatttgtaatgctcatcaaatcatcaatagta |
4634099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 660198 - 660434
Alignment:
| Q |
1 |
aaaagcatcagttagtgctttcattcctttctgtacattgcacctacaaaagcatcagtca----cttatggtgttcaagttaaatgccaaccatcttat |
96 |
Q |
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| T |
660198 |
aaaagcatcagtcagtgcttacattcatttttgtacattgcgcttacaaaaggatcggtcattcacttatagtgttcaagt-aaatgccaagcattttat |
660296 |
T |
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| Q |
97 |
atgcctagtcatactttctattcacgcagttcaataatagacatcaactatggtttttgagccggcagcggtacttagcctaattgtttacatcaaaaca |
196 |
Q |
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| T |
660297 |
atgc--agtcatagattagattcacgcagttcaataatgaacatcaaccatggtttttgagccggcagcgctacttagcctaattgtttacaacaaaaca |
660394 |
T |
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| Q |
197 |
tgacagtagaatttgtatgctcatcaaatcatcaatagta |
236 |
Q |
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| T |
660395 |
tgacagtagaatttgtatgctcatcaaatcatcaatagta |
660434 |
T |
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