View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18632_low_24 (Length: 240)
Name: NF18632_low_24
Description: NF18632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18632_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 52801221 - 52801135
Alignment:
| Q |
20 |
ctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagacaatggaacatagtag |
106 |
Q |
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| T |
52801221 |
ctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagacaatggaacatagtag |
52801135 |
T |
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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 52801067 - 52801013
Alignment:
| Q |
174 |
cttctcatggaaatgggagatgtacaaataaatggttaaattatggcctatgcta |
228 |
Q |
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| T |
52801067 |
cttctcatggaaatggaagatgtacaaataaatggttaaattatggcctatgcta |
52801013 |
T |
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Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 3187264 - 3187175
Alignment:
| Q |
20 |
ctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagacaatggaacatagtagtgc |
109 |
Q |
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| T |
3187264 |
ctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagataatggaacatagtagtgc |
3187175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 3187143 - 3187089
Alignment:
| Q |
174 |
cttctcatggaaatgggagatgtacaaataaatggttaaattatggcctatgcta |
228 |
Q |
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| T |
3187143 |
cttctcatggaaatgggagatgtacaaataaatggttaaattatggcttatgcta |
3187089 |
T |
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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 18886503 - 18886592
Alignment:
| Q |
20 |
ctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagacaatggaacatagtagtgc |
109 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
18886503 |
ctattttccaaataaagaatcaatctcaaggcaacaagcagctacatgtcttgtttgtggagatagacggacaatggaacatagtagtgc |
18886592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 3917498 - 3917531
Alignment:
| Q |
20 |
ctattttccaaataaagaatcaatctcaaggcac |
53 |
Q |
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| T |
3917498 |
ctattttccgaataaagaatcaatctcaaggcac |
3917531 |
T |
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