View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18632_low_7 (Length: 466)
Name: NF18632_low_7
Description: NF18632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18632_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 9 - 451
Target Start/End: Complemental strand, 33820669 - 33820231
Alignment:
| Q |
9 |
gagagtgtatctgaagaagtcaaattaagtgggagaatagactagagtgaggtaccactcactaagcttgataacgcgttgctttttgtaaattcttagg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33820669 |
gagagtgtatctgaagaagtcaaattaagtgggagaatagactagagtgaggtaccact----aagcttgataacgcgttgctttttgtaaattcttagg |
33820574 |
T |
|
| Q |
109 |
accatgtactaattgcattggattgtgcggcacgctttcattatgtatcaaccgtgttatttattggttgttattacttattattgctaatctacatgta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33820573 |
accatgtactaattgcattggattgtgcggcacgctttcattatgtatcaaccgtgttatttattggttgttattacttattattgctaatctacatgta |
33820474 |
T |
|
| Q |
209 |
tttatatagccagctaattgcagacatagtcaatgactgtgtacgagacaaggagacaacaagctatactagtcttcatgtacgcagtaagcctctttga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33820473 |
tttatatagccagctaattgcagacatagtcaatgactgtgtacgagacaaggagacaacaagctatactagtcttcatgtacgcagtaagcctctttga |
33820374 |
T |
|
| Q |
309 |
attcttttgctttatggaatactagtatgcttacttttagctatagtaattcaattagtactacctagtaaaaagaccccgttttaatttatgttnnnnn |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33820373 |
attcttttgctttatggaatactagtatgcttacttttagctatagtaattcaattagtactacctagtaaaaagaccccgttttaacttatgttaaaaa |
33820274 |
T |
|
| Q |
409 |
nnnnnnnntgctaacaagtgttccataaaagaatggtgagatg |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
33820273 |
aggaaaaatgctaacaagtgttccataaaagaatggtgagatg |
33820231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 33827894 - 33827799
Alignment:
| Q |
10 |
agagtgtatctgaagaagtcaaattaagtgggagaatagactagagtgaggtaccactcactaagcttgataacgcgttgctttttgtaaattcttagga |
109 |
Q |
| |
|
||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| ||| ||||||||||||| ||| | |||| ||||||||||||| |
|
|
| T |
33827894 |
agagtgtatctgaggaagtcaaaataagggggagaatagactagagtgaggtac----caccaagcttgataacgtgtttc-ttttctaaattcttagga |
33827800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 12244202 - 12244166
Alignment:
| Q |
25 |
aagtcaaattaagtgggagaatagactagagtgaggt |
61 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
12244202 |
aagtcaaattaagggtgagaatagactagagtgaggt |
12244166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University