View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18632_low_9 (Length: 422)
Name: NF18632_low_9
Description: NF18632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18632_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 40662810 - 40663205
Alignment:
| Q |
19 |
gtagttggacctctgaaaataccgttgaagaaatatgtttaggttagcaaagaaatggctgtgaggatgtattctgagatggtcactcttcaaactatgg |
118 |
Q |
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| T |
40662810 |
gtagttggacctctgaaaatatcgttgaagaaatatgtttaggttagcaaagaaatggctgtgaggatgtattctgagatggtcactcttcaaactatgg |
40662909 |
T |
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| Q |
119 |
acagcatattctatgaggtacagaggcaaggaagaatttccttctacctcacttcaatgggagaagaagcagttaacattgcatcagcagctgcactttc |
218 |
Q |
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| T |
40662910 |
acagcatattctatgaggtacagagacaaggaagaatttccttctacctcacttcaatgggagaagaagcagttaacattgcatcagcagctgcactttc |
40663009 |
T |
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| Q |
219 |
ttctgatgatattatcttgcctcaggtttgcttctgccccaaggcgttgaaattccctcgtgcnnnnnnncaaattcaactcccttttttca-ttttcta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
40663010 |
ttctgatgatattatcttgcctcaggtttgcttctgccccaaggcgttgaaattccctcgtgctttttttcaaattcaactcccttttttcatttttcta |
40663109 |
T |
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| Q |
318 |
tattacactttctgctattatggatctataataacaaaataggacaattgaaactcctaaatatgaatcaccaatttaagacacttatagtataat |
413 |
Q |
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| T |
40663110 |
tattacactttctgctattatggatctataataacaaaataggacaattgaaactcctaaatgtgaatcaccaatttaagacacttataatataat |
40663205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 65 - 413
Target Start/End: Original strand, 31913903 - 31914249
Alignment:
| Q |
65 |
gcaaagaaatggctgtgaggatgtattctgagatggtcactcttcaaactatggacagcatattctatgaggtacagaggcaaggaagaatttccttcta |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
31913903 |
gcaaagaaatggctgtgaggatgtattctgagatggtcactcttcaaactatggacagcatattct-tctggtacagaggcaaggaagaatttccttcta |
31914001 |
T |
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| Q |
165 |
cctcacttcaatgggagaagaagcagttaacattgcatcagcagctgcactttcttctgatgatattatcttgcctcaggtttgcttctgccccaaggcg |
264 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
31914002 |
cctcacctcaatgggagaagaagcagttaacattgcatcagcagctgcgctttcttctgatgata-tatcttgcttcaggtttgcttctgccccaaggca |
31914100 |
T |
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| Q |
265 |
ttgaaattccctcgtgcnnnnnnncaaattcaactcccttttttcattttctatattacactttctgctattatggatctataataacaaaataggacaa |
364 |
Q |
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||||||||||||| || |||||||||||| |||| | ||| |||| ||||| ||||||||||| ||||||| || ||| ||||||||||| |
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| T |
31914101 |
ttgaaattccctcatgtttcttttcaaattcaactcatttttatattttgctatgttacaatttctgctattgtggatctctagaaacgaaataggacaa |
31914200 |
T |
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| Q |
365 |
ttgaaactcctaaatatgaatcaccaatttaagacacttatagtataat |
413 |
Q |
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|||||||| |||| ||||||||||||||||||||||| || |||||| |
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| T |
31914201 |
ctgaaactctcaaatgtgaatcaccaatttaagacacttgtaatataat |
31914249 |
T |
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