View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_high_11 (Length: 354)
Name: NF18633_high_11
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 10102072 - 10102389
Alignment:
| Q |
20 |
ttatccttgtcaaattttagcaagaaaataaataaattggtgccaccaattaatggagttttgtgcagccacaccctcagagtcaccgtgagtactcatg |
119 |
Q |
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| T |
10102072 |
ttatccttgtcaaattttagcaagaaaataaataaattggtgccaccaattaatggtgttttgtgcagccacaccctcagagtcaccgtgagtactcatg |
10102171 |
T |
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| Q |
120 |
ttgaatttatttgctctaaagcttaattgtgaatgtatttcaaatacagatgcgtgcagctgtgcgtgaagttgctagttattttcctactgccattatt |
219 |
Q |
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| T |
10102172 |
ttgaatttatttgctctaaagcttaattgtga----atttcaaatacagatgcgtgcagctgtgcgtgaagttgctagttattttcctactgccattatt |
10102267 |
T |
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| Q |
220 |
agtggaaggagtagaaataaggtaaaacattcacttaattaataatactgaatcatatagatatcc-ttttttcttaggctctttgcattgttccatttt |
318 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
10102268 |
agtggaagaagtagaaataaggtaaaacattcacttaat---taatactgaatcatatagatatcctttttttcttaggctctttgcattgttccttttt |
10102364 |
T |
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| Q |
319 |
agtctagtatttacatgacattcat |
343 |
Q |
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||||||||||||||||||||||||| |
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| T |
10102365 |
agtctagtatttacatgacattcat |
10102389 |
T |
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