View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_high_24 (Length: 236)
Name: NF18633_high_24
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 8162188 - 8162332
Alignment:
| Q |
1 |
aaagtgctgtttcgatgtaatgttgattgatgctcatatgccaaacatggatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgtt |
100 |
Q |
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| T |
8162188 |
aaagtgctgtttcgatgtaatgttgattgatgctcgtatgccaaacatggatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgct |
8162287 |
T |
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| Q |
101 |
atcagtaagaatttatttaactttacatttaaagtcattatagtt |
145 |
Q |
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| T |
8162288 |
atcagtaagaatttatttaactttacatttaaagtcattatagtt |
8162332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 7243984 - 7244117
Alignment:
| Q |
7 |
ctgtttcgatgtaatgttgattgatgctcatatgccaaacatggatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgttatcagt |
106 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||||||| | |||||||| || ||| |
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| T |
7243984 |
ctgtttcgatgtaatgttgattgatcctcatatgccaaacatggatgcttatgactttgtccaacatgttaccctacaactcaacattcctgtcattagt |
7244083 |
T |
|
| Q |
107 |
aagaatttatttaactttacatttaaagtcatta |
140 |
Q |
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| T |
7244084 |
aagaatttattcaactttacactaaaattcatta |
7244117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 7218478 - 7218598
Alignment:
| Q |
7 |
ctgtttcgatgtaatgttgattgatgctcatatgccaaacatggatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgttatcagt |
106 |
Q |
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| T |
7218478 |
ctgtttcgatgtaatgttgattgatcctcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagt |
7218577 |
T |
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| Q |
107 |
aagaatttatttaactttaca |
127 |
Q |
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||||||||||| ||||||||| |
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| T |
7218578 |
aagaatttattcaactttaca |
7218598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 7317585 - 7317465
Alignment:
| Q |
7 |
ctgtttcgatgtaatgttgattgatgctcatatgccaaacatggatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgttatcagt |
106 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| ||| | |||||||| || ||| |
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| T |
7317585 |
ctgttttgatgtaatgttgattgatgctcatatgccaaacatggatgtttatgactttgtccaacatgttaccctactactcaaaattcctgtcattagt |
7317486 |
T |
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| Q |
107 |
aagaatttatttaactttaca |
127 |
Q |
| |
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|||||||| || ||||||||| |
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| T |
7317485 |
aagaatttcttcaactttaca |
7317465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 7324367 - 7324243
Alignment:
| Q |
14 |
gatgtaatgttgattgatgctcatatgccaaacatggatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgttatcagtaagaatt |
113 |
Q |
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||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| ||| | |||||||||| | ||||||||||| |||||||||| |
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| T |
7324367 |
gatgtaatgttgattgatgctcatatgccgaacatggatgtctatgactttgtccaaaatgctaccctacaactcaacattcctgttattagtaagaatt |
7324268 |
T |
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| Q |
114 |
tatttaactttacatttaaagtcat |
138 |
Q |
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| || ||||||| || |||||||| |
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| T |
7324267 |
tcttcaactttaagttgaaagtcat |
7324243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 22766413 - 22766295
Alignment:
| Q |
7 |
ctgtttcgatgtaatgttgattgatgctcatatgccaaacatggatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgttatcagt |
106 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||| | || ||||| | ||||||||||| ||| |
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| T |
22766413 |
ctgttttgatgtaatgttaattgatgctcatatgccaaacatggatgcctatgattttgttcaacatgctaccggtcaactcaatattcctgttattagt |
22766314 |
T |
|
| Q |
107 |
aagaatttatttaacttta |
125 |
Q |
| |
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||| |||| || ||||||| |
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| T |
22766313 |
aagtatttcttcaacttta |
22766295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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