View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_high_5 (Length: 512)
Name: NF18633_high_5
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 11 - 493
Target Start/End: Original strand, 39312967 - 39313448
Alignment:
| Q |
11 |
atcatcaacacatttaccatccagataagtcaatttagtcccacaacgagcaaggtggtgtcattataatctctgaatgtatcaacagtactgaaatatc |
110 |
Q |
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| T |
39312967 |
atcatcagcacatttaccatccagataagtcaatttagtcccacaacgagcaaggtggtgtcattataatctctgaatgtatcaacattactgaaatatc |
39313066 |
T |
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| Q |
111 |
cctaaatttatcttctgttagtaatttcgtgcacaaattgactaacgaaagacacacatgaggacgaaattaaccaacgaaaacaaaaacgaggaccaaa |
210 |
Q |
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| T |
39313067 |
cctaaatttatcttctgttagtaatttcgtgcacaaattgactaatggaagacacacatgaggacgaaattaaccaacgaaaacaaaaacgaggaccaa- |
39313165 |
T |
|
| Q |
211 |
ctaactaacgaaagacacattcgggtatgcttttgtaatgttgatacattcatgttctgcggtgacaacgagtgacacattaacgaatatgaatatttac |
310 |
Q |
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| T |
39313166 |
ctaactaacgaaagacacattcgggtatgattttgtaattttgatacattcaagttctgcggtgacaacgagggacacattaacgaatatgaatatttac |
39313265 |
T |
|
| Q |
311 |
taaaataataaagtatctcgccgaaaaatgagtgaaacaaatgtaaagtcactcacaagcatgtctccattggcaatgccatcaaacaaagaaggtttga |
410 |
Q |
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| T |
39313266 |
taaaataataaagtatctcgccgaaaaatgagtgaaacaaatgtaaagtcactcacaagcatgtctccattggcaatgccatcaaacaaagaaggtttga |
39313365 |
T |
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| Q |
411 |
tccaaccttcaataacaagccaccctcctaagttgactcctctaactttagatccaccatgtaacccgtccacttcaaagaaa |
493 |
Q |
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| T |
39313366 |
tccaaccttcaataacaagccaccctcctaagttcactcctctaactttagatccaccatgtaacccgtccacttcaaagaaa |
39313448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 5553259 - 5553200
Alignment:
| Q |
203 |
ggaccaaactaactaacgaaagacacattcgggtatgcttttgtaatgttgatacattca |
262 |
Q |
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|||||||||| |||||| ||||||||||| |||||| ||||||||| || ||||||||| |
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| T |
5553259 |
ggaccaaactgactaacaaaagacacatttgggtatctttttgtaattttaatacattca |
5553200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 10092546 - 10092592
Alignment:
| Q |
121 |
tcttctgttagtaatttcgtgcac-aaattgactaacgaaagacaca |
166 |
Q |
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| T |
10092546 |
tcttctgttagtaattttgtggaccaaattgactaacgaaagacaca |
10092592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 42298267 - 42298324
Alignment:
| Q |
200 |
cgaggaccaaactaactaacgaaagacacattcgggtatgcttttgtaatgttgatac |
257 |
Q |
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||||||||||| | | |||| ||||||||||| ||||||| |||||||||||||||| |
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| T |
42298267 |
cgaggaccaaaatgattaacaaaagacacatttaggtatgcctttgtaatgttgatac |
42298324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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