View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_high_6 (Length: 487)
Name: NF18633_high_6
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 25 - 469
Target Start/End: Original strand, 7304467 - 7304911
Alignment:
| Q |
25 |
tgggcagtggctcctacgagatagggtctggggagggtagatgcacgcagctttacccttacaagcagagagtttgtttgaaatatttaaacccgtaaca |
124 |
Q |
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| T |
7304467 |
tgggcagtggctcctacgagatagggtttggggagggtagatgcacacagctttacccttacaagcagagagtttgtttgaaatatttaaacccgtaaca |
7304566 |
T |
|
| Q |
125 |
tcattgttacatggcaacaacctaaccgttgcgccaaggctcgccctctaaatagaatagagataatacaagaaaagaaaaatagatcagagaccaacca |
224 |
Q |
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| T |
7304567 |
tcattgttacatggcaacaacctaaccgttgcgccaaggcttgccttctaaatagaatagagataatacaagaaaagaaaaatagatcagagaccaacca |
7304666 |
T |
|
| Q |
225 |
atgcagcaagatcggcaccactatagttttcacaggctttcaatcttccaatggcgctcaaatccacactggcatcaataggcataagcttaaaccttgc |
324 |
Q |
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| T |
7304667 |
atgcagcaagatcggcaccactatagttttcacaggctttcgatcttccaatggcgctcaaatccacactggcatcaataggcataagcttaaaccttgc |
7304766 |
T |
|
| Q |
325 |
atgagtttccttacgccttgcaagagcttccttgctccttgcaagagcttttaagatcgaaacacggccgtctgggcttggaagagaaatataaatatga |
424 |
Q |
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| T |
7304767 |
atgagtttccttacgccttgcaagagcttccttgctccttgcaagagcttttaagatcgaaacacggccgtctgggcttggaagagaaatataaatatga |
7304866 |
T |
|
| Q |
425 |
ttaccaaatctacccggacgtaggacaactttgtccatctccaaa |
469 |
Q |
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| T |
7304867 |
ttaccaaatctacccggacgtaggacagctttgtccatctccaaa |
7304911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 133 - 439
Target Start/End: Original strand, 7295340 - 7295653
Alignment:
| Q |
133 |
acatggcaacaacctaaccgttgcgccaaggctcgccctctaaatagaatagagataatacaagaaaagaa-aaatagatcagagaccaaccaatgcagc |
231 |
Q |
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| T |
7295340 |
acatggcaacaaccttaccgttgcgccaaggcccaccctctaaaaagaataaggagattacaataaccaacgaaagagcgcagagacaaaccaatgcagc |
7295439 |
T |
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| Q |
232 |
aagatcggcaccactatagttttcacaggctttcaatcttccaatggcgctcaaatccacactggca------tcaataggcataagcttaaaccttgca |
325 |
Q |
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| T |
7295440 |
aagatcagcaccattaaagtttttacaagctttcattcttgcaatgtcgctcaaatccacactggcatcggcatcaataggcttaagcttaaaccttgca |
7295539 |
T |
|
| Q |
326 |
tgagtttccttacgccttgcaagagcttccttgctccttgcaagagcttttaagatcgaaacacggccgtctgggcttggaagagaaatataaatatgat |
425 |
Q |
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| T |
7295540 |
tgagtttccttacgcctagcaagagtttccttacgccttgcaagagttttcaatatcgaaacacggtcgtctgggcttggaagagggatatgaataagat |
7295639 |
T |
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| Q |
426 |
taccaaatctaccc |
439 |
Q |
| |
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| T |
7295640 |
taccaaatctaccc |
7295653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 304
Target Start/End: Complemental strand, 790994 - 790911
Alignment:
| Q |
221 |
accaatgcagcaagatcggcaccactatagttttcacaggctttcaatcttccaatggcgctcaaatccacactggcatcaata |
304 |
Q |
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|||||| |||||||||| ||||| ||| ||||||||| || | || ||||||||||||||||||||| ||||| | ||||||| |
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| T |
790994 |
accaattcagcaagatcagcaccgctaaggttttcacatgcatccattcttccaatggcgctcaaatctacactagaatcaata |
790911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 21333101 - 21333139
Alignment:
| Q |
137 |
ggcaacaacctaaccgttgcgccaaggctcgccctctaa |
175 |
Q |
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| T |
21333101 |
ggcaacaacctcaccgttgtgccaaggctcgccctctaa |
21333139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 304
Target Start/End: Complemental strand, 39336366 - 39336281
Alignment:
| Q |
221 |
accaatgcagcaagatcggcaccactatagttttcacaggctttcaatcttccaatg--gcgctcaaatccacactggcatcaata |
304 |
Q |
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||||||||||||||||| || |||||| |||||||||| ||| || |||| ||||| | ||||||||||| |||||||||||| |
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| T |
39336366 |
accaatgcagcaagatccgcgccactaaagttttcacaatcttccattcttgcaatgacacactcaaatccacgctggcatcaata |
39336281 |
T |
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