View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_high_9 (Length: 410)
Name: NF18633_high_9
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 8162098 - 8161707
Alignment:
| Q |
1 |
taaagtaagatatttttaccgaaaaagatggatactttaaataaggtatgattcagtacctaaccttgataattgcatcgattacacatctcctcgatgg |
100 |
Q |
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| T |
8162098 |
taaagtaagatatttttaccaaaaaagatggatactttaaataaggtatgattcagtacctaaccttgataattgcatcgattacacatctcctcgatgg |
8161999 |
T |
|
| Q |
101 |
aattaaggagagtgatgtcatgatcaattgcaaggaccttgagaccttctgggaatgatggtttgtcaatgaaaagggtcattgcaattttgtcaggaaa |
200 |
Q |
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| T |
8161998 |
aattaaggagagtgatgtcatgatcaattgcaaggacctagagaccttctgggaatgatggtttgtcaatgaaaagggtcattgcaattttgtcaggaaa |
8161899 |
T |
|
| Q |
201 |
gaaacggatagtaagttcttagggtacaagaattgatactgaaaaataccaagagtgtggggttgaaggaagaaaaagaatgagcaaatcttattcttct |
300 |
Q |
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| T |
8161898 |
gaaacggatagtaagttcttagggtacaagaattgacactgaaaaataccaagagtgtggggttgaaggaagaaaaagaatgagcaaatcttattcttct |
8161799 |
T |
|
| Q |
301 |
tggagatcccttgaagagaaacttagggttttgttaagtatgagtgaatgagtgagtgatatttatagtatctaaaatttagggttttgatt |
392 |
Q |
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| T |
8161798 |
tggagatcccttgaagagaaacttagggttttgttacgtatgagtgaataagtgagtgatatttatagtatctaaaatttagggttttgatt |
8161707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 7218382 - 7218174
Alignment:
| Q |
2 |
aaagtaagatatttttaccgaaaaagatggatactttaaataaggtatgattcagtacctaaccttgataattgcatcgattacacatctcctcgatgga |
101 |
Q |
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| T |
7218382 |
aaagtaaga-atttttaccaaaaaagatgaaaacattgaataaggtgtgattcagtaactaacccttataattgcatcgattacacatctcctcgatgga |
7218284 |
T |
|
| Q |
102 |
attaaggagagtgatgtcatgatcaattgcaaggaccttgagaccttctgggaatgat---ggtttgtcaatgaaaagggtcattgcaattttgtcagga |
198 |
Q |
| |
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||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| || |
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| T |
7218283 |
attcaggagagtgatgtcatgatcaattgcaagaaccttgagaccttctgggaatgatgcaggtttgtcggtgaaaagggccattgcaattttgtcaaga |
7218184 |
T |
|
| Q |
199 |
aagaaacgga |
208 |
Q |
| |
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||| |||||| |
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| T |
7218183 |
aagtaacgga |
7218174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 190
Target Start/End: Complemental strand, 7243808 - 7243678
Alignment:
| Q |
60 |
ctaaccttgataattgcatcgattacacatctcctcgatggaattaaggagagtgatgtcatgatcaattgcaaggaccttgagaccttctgggaatgat |
159 |
Q |
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|||||||||||||| | ||||||||||||| ||||| || | ||||| | |||||||||||||||||| |||| ||||||||||| | ||||||||| |
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| T |
7243808 |
ctaaccttgataatggaatcgattacacatatcctcaatagtgttaagaacagtgatgtcatgatcaatagcaataaccttgagaccagcagggaatgat |
7243709 |
T |
|
| Q |
160 |
ggtttgtcaatgaaaagggtcattgcaattt |
190 |
Q |
| |
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| T |
7243708 |
gggttgtcaatgaaaaaagccattgcaattt |
7243678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 7317778 - 7317876
Alignment:
| Q |
77 |
atcgattacacatctcctcgatggaattaaggagagtgatgtcatgatcaattgcaaggaccttgagaccttctgggaatgatggtttgtcaatgaaaa |
175 |
Q |
| |
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||||||||||||||||||| || || || |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| |||||| |
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| T |
7317778 |
atcgattacacatctcctcaatagagttgaggaaagtgatgtcatgatcaattgcaataaccttgagaccggctgggaatgatgggttgtcagtgaaaa |
7317876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 359 - 393
Target Start/End: Complemental strand, 7217994 - 7217960
Alignment:
| Q |
359 |
atatttatagtatctaaaatttagggttttgattt |
393 |
Q |
| |
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| T |
7217994 |
atatttatagtatctaaaatttagggttttgattt |
7217960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 7218132 - 7218088
Alignment:
| Q |
262 |
gttgaaggaagaaaaagaatgagcaaatcttattcttcttggaga |
306 |
Q |
| |
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||||| ||||||||||||||||| ||||||| ||||||||||||| |
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| T |
7218132 |
gttgagggaagaaaaagaatgagtaaatcttgttcttcttggaga |
7218088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 7324538 - 7324666
Alignment:
| Q |
55 |
agtacctaaccttgataattgcatcgattacacatctcctcgatggaattaaggagagtgatgtcatgatcaattgcaaggaccttgagaccttctggga |
154 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| ||||| || | ||||| | | |||||||||||||||| |||| ||| | ||||| | |||| |
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| T |
7324538 |
agtaactaaccttgataatgatatcgattacacatatcctcaatagtgttaagaacaatgatgtcatgatcaatggcaataacccttagaccagcaggga |
7324637 |
T |
|
| Q |
155 |
atgatggtttgtcaatgaaaagggtcatt |
183 |
Q |
| |
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||||||| ||||||| |||| ||| |||| |
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| T |
7324638 |
atgatgggttgtcaacgaaacgggccatt |
7324666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 55 - 175
Target Start/End: Original strand, 22766557 - 22766677
Alignment:
| Q |
55 |
agtacctaaccttgataattgcatcgattacacatctcctcgatggaattaaggagagtgatgtcatgatcaattgcaaggaccttgagaccttctggga |
154 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||| |||| ||||||| |||| |||||||||||||||||| || |||||||| || |||| |
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| T |
22766557 |
agtaactaaccttgataatgacatcgattacacatctcctcaatggtgttaaggaaagtggtgtcatgatcaattgcaataacgttgagaccatcaggga |
22766656 |
T |
|
| Q |
155 |
atgatggtttgtcaatgaaaa |
175 |
Q |
| |
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||||||| ||||| ||||||| |
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| T |
22766657 |
atgatgggttgtcgatgaaaa |
22766677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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