View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18633_low_1 (Length: 721)

Name: NF18633_low_1
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18633_low_1
NF18633_low_1
[»] chr3 (12 HSPs)
chr3 (19-608)||(53286405-53286994)
chr3 (95-335)||(54139698-54139943)
chr3 (92-335)||(52808073-52808316)
chr3 (497-604)||(39759403-39759512)
chr3 (25-95)||(54141771-54141841)
chr3 (522-600)||(43823478-43823557)
chr3 (368-460)||(39759242-39759334)
chr3 (409-498)||(43067921-43068011)
chr3 (401-498)||(43823614-43823711)
chr3 (184-317)||(1924162-1924293)
chr3 (339-377)||(32574628-32574666)
chr3 (26-80)||(52806688-52806742)
[»] chr6 (3 HSPs)
chr6 (25-608)||(11842751-11843358)
chr6 (497-604)||(3288486-3288595)
chr6 (368-456)||(3288658-3288746)
[»] chr4 (19 HSPs)
chr4 (113-303)||(48431774-48431964)
chr4 (484-608)||(48236161-48236288)
chr4 (497-604)||(41055478-41055587)
chr4 (497-604)||(55682033-55682142)
chr4 (496-604)||(374949-375059)
chr4 (497-604)||(7199255-7199364)
chr4 (497-600)||(51470076-51470181)
chr4 (497-608)||(49811683-49811796)
chr4 (336-460)||(7199062-7199186)
chr4 (520-604)||(37517466-37517550)
chr4 (520-604)||(37521682-37521766)
chr4 (368-460)||(20790102-20790194)
chr4 (368-460)||(37517633-37517725)
chr4 (368-460)||(37521849-37521941)
chr4 (336-460)||(51470250-51470374)
chr4 (336-387)||(11944922-11944973)
chr4 (401-459)||(55681905-55681963)
chr4 (383-451)||(375115-375183)
chr4 (401-448)||(42491054-42491101)
[»] chr1 (14 HSPs)
chr1 (92-276)||(23707176-23707358)
chr1 (497-604)||(42872601-42872710)
chr1 (497-604)||(52004838-52004947)
chr1 (497-604)||(52539329-52539438)
chr1 (366-468)||(42872772-42872874)
chr1 (497-604)||(20010724-20010833)
chr1 (260-335)||(23619277-23619352)
chr1 (260-335)||(23650622-23650697)
chr1 (260-335)||(23736058-23736133)
chr1 (368-498)||(52004978-52005108)
chr1 (368-451)||(52539190-52539273)
chr1 (336-438)||(14620673-14620775)
chr1 (405-447)||(52789510-52789552)
chr1 (405-448)||(36392452-36392495)
[»] chr7 (8 HSPs)
chr7 (497-608)||(48826802-48826914)
chr7 (497-604)||(33516424-33516533)
chr7 (520-604)||(43613833-43613918)
chr7 (502-600)||(46067201-46067301)
chr7 (336-461)||(48826631-48826755)
chr7 (336-460)||(11591285-11591409)
chr7 (497-602)||(11591464-11591570)
chr7 (369-460)||(33516591-33516682)
[»] chr2 (6 HSPs)
chr2 (371-514)||(21472702-21472845)
chr2 (497-603)||(33458361-33458469)
chr2 (401-498)||(33458500-33458597)
chr2 (497-600)||(34478944-34479049)
chr2 (337-438)||(17903658-17903759)
chr2 (409-460)||(34479118-34479169)
[»] scaffold0368 (2 HSPs)
scaffold0368 (522-604)||(7905-7988)
scaffold0368 (366-468)||(7715-7817)
[»] scaffold0101 (2 HSPs)
scaffold0101 (497-604)||(18740-18849)
scaffold0101 (336-460)||(18547-18671)
[»] scaffold0699 (1 HSPs)
scaffold0699 (520-604)||(23-108)
[»] chr8 (3 HSPs)
chr8 (497-604)||(38566624-38566733)
chr8 (368-498)||(38566463-38566593)
chr8 (336-387)||(23728686-23728737)
[»] chr5 (6 HSPs)
chr5 (520-604)||(37369639-37369724)
chr5 (497-600)||(41992333-41992438)
chr5 (368-498)||(37369779-37369909)
chr5 (368-451)||(41992194-41992277)
chr5 (337-387)||(8595030-8595080)
chr5 (368-438)||(41020474-41020544)


Alignment Details
Target: chr3 (Bit Score: 586; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 19 - 608
Target Start/End: Complemental strand, 53286994 - 53286405
Alignment:
Q  19 ctgggaagttccttcaaattctgacagcacaactagtatgaaagaataaaactcttatacaatttaattgacgatgtaatcagtttgacatttgaggaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53286994 ctgggaagttccttcaaattctgacagcacaactagtatgaaagaataaaactcttatacaatttaattgacgatgtaatcagtttgacatttgaggaaa 53286895  T
Q  119 cacatactctagaagctaaagtggtagatattctaaaggatcaactggaaagctaatatctagtttacttgattgcgattcatcttgtcattccttatac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53286894 cacatactctagaagctaaagtggtagatattctaaaggatcaactggaaagctaatatctagtttacttgactgcgattcatcttgtcattccttatac 53286795  T
Q  219 aacttatgcagaaaccaggagtttcaattccaatagcaaggcaatttattacactcgaagcctattttaatttcttaaaattcagtgtgaacttaacctt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53286794 aacttatgcagaaaccaggagtttcaattccaatagcaaggcaatttattacactcgaagcctattttaatttcttaaaattcagtgtgaacttaacctt 53286695  T
Q  319 aacttatgtgttctacactgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53286694 aacttatgtgttctacactgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggc 53286595  T
Q  419 ggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgatcgggtcaaagcggacgcttttcacttaaaaccgtttttagg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53286594 ggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgatcgggtcaaagcggacgcttttcacttaaaaccgtttttagg 53286495  T
Q  519 ccatttttgtaattttcaaaacctaactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtacaaac 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53286494 ccatttttgtaattttcaaaacctaactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtacaaac 53286405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 95 - 335
Target Start/End: Complemental strand, 54139943 - 54139698
Alignment:
Q  95 taatcagtttgacatttgaggaaacacatactctagaagcta----aagtggtagatattctaaaggatcaactggaaagctaatatctagtttacttga 190  Q
    |||||| |||||||||||||||||||| ||||||||||||||    |||||| |||||||| ||||||||||| |||| ||||||| |||||||||||||    
T  54139943 taatcaatttgacatttgaggaaacacgtactctagaagctagctaaagtggcagatattcaaaaggatcaaccggaacgctaataactagtttacttga 54139844  T
Q  191 ttgcgattcatcttgtcattccttatacaacttatgcagaaaccaggagtttcaattccaatagcaaggcaatttattacactcgaagcctattttaatt 290  Q
     |||||||||| ||| |||||||||||||| |||| |||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  54139843 ctgcgattcattttgacattccttatacaaattattcagaaagccggagtttcaattccaatagcaagacaattcattacactcgaagcctattttaatt 54139744  T
Q  291 tcttaaaattcagtgtgaacttaaccttaactt-atgtgttctaca 335  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  54139743 tcttaaaattcagcgtgaacttaaccttaacttaatgtgttctaca 54139698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 92 - 335
Target Start/End: Original strand, 52808073 - 52808316
Alignment:
Q  92 atgtaatcagtttgacatttgaggaaacacatactctagaagctaaagtggtagatattctaaaggatcaactggaaagctaatatctagtttacttgat 191  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||    
T  52808073 atgtaatcaatttgacgtttgaggaaacacatactctagaagctaaagtggtagatattctaaaggatcaatttgaaagctaataactagtttacttgat 52808172  T
Q  192 tgcgattcatcttgtcattccttatacaacttatgcagaaaccaggagtttcaattccaatagcaaggcaatttattacactcgaagcctattttaattt 291  Q
    |  ||||||| ||| ||||||||| |||| | ||||| ||||| ||||||||| ||||||| || || ||||| |||||||| ||  ||||||||||| |    
T  52808173 taagattcattttgacattccttaaacaattcatgcaaaaacctggagtttcatttccaattgccagacaattcattacacttgagacctattttaatct 52808272  T
Q  292 cttaaaattcagtgtgaacttaaccttaacttatgtgttctaca 335  Q
    ||| ||||||||||||||||||||||||||||||||||||||||    
T  52808273 cttcaaattcagtgtgaacttaaccttaacttatgtgttctaca 52808316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 497 - 604
Target Start/End: Original strand, 39759403 - 39759512
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  39759403 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 39759502  T
Q  595 ttcatcgtac 604  Q
    ||||||||||    
T  39759503 ttcatcgtac 39759512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 54141841 - 54141771
Alignment:
Q  25 agttccttcaaattctgacagcacaactagtatgaaagaataaaactcttatacaatttaattgacgatgt 95  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54141841 agttccttcaaattccgacagcacaactagcatgaaagaataaaactcttatacaatttaattgacgatgt 54141771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 522 - 600
Target Start/End: Complemental strand, 43823557 - 43823478
Alignment:
Q  522 tttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatc 600  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||    
T  43823557 tttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcatc 43823478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 368 - 460
Target Start/End: Original strand, 39759242 - 39759334
Alignment:
Q  368 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 460  Q
    |||||||||||||| |||||| ||  ||| |  |||||||  |||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  39759242 cgcggcgcggagcggccaaaaacaacaaagcgcgacacagtactccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggg 39759334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 409 - 498
Target Start/End: Original strand, 43067921 - 43068011
Alignment:
Q  409 gctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgat-cgggtcaaagcggacgctttt 498  Q
    ||||||| |||||||||||||||||||||| |||||||||||| ||||||||   |||||  || |||| ||||||||||||| |||||||    
T  43067921 gctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggggcaaaagcgggcgcgatgcgggtcaaagcgggcgctttt 43068011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 401 - 498
Target Start/End: Complemental strand, 43823711 - 43823614
Alignment:
Q  401 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgat-cgggtcaaagcggacgctttt 498  Q
    ||||||| ||||||| ||||||| |||||||||||||| |||||||||||| |||||||| | |||||  || |||| ||||||||||||| |||||||    
T  43823711 gacacagtgctccaacgcggagcatttggagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggcgcgatgcgggtcaaagcgggcgctttt 43823614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 317
Target Start/End: Complemental strand, 1924293 - 1924162
Alignment:
Q  184 tacttgattgcgattcatcttgtcatt-ccttatacaacttatgcagaaaccaggagtttcaattccaatagcaaggcaatttattacactcgaagccta 282  Q
    |||||||||| ||||||| ||| |||| ||||| |||| | ||||||||||  ||  ||||||||||||  || || ||||| ||||||||| |||||||    
T  1924293 tacttgattgtgattcattttgacattaccttaaacaattcatgcagaaactcgg--tttcaattccaactgcgagacaattaattacactcaaagccta 1924196  T
Q  283 ttttaatttcttaaaattcag-tgtgaacttaacct 317  Q
    |||| || |||  |||||||| ||||||||||||||    
T  1924195 ttttcatctct--aaattcagctgtgaacttaacct 1924162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 339 - 377
Target Start/End: Complemental strand, 32574666 - 32574628
Alignment:
Q  339 ttgtcaatagcggccgctaacagcgctatcgcggcgcgg 377  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  32574666 ttgtcaatagcggccgctaccggcgctatcgcggcgcgg 32574628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 52806688 - 52806742
Alignment:
Q  26 gttccttcaaattctgacagcacaactagtatgaaagaataaaactcttatacaa 80  Q
    ||||||||||||||  ||||||||||| ||||||||||| |||| || |||||||    
T  52806688 gttccttcaaattcatacagcacaactggtatgaaagaacaaaattcatatacaa 52806742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 25 - 608
Target Start/End: Original strand, 11842751 - 11843358
Alignment:
Q  25 agttccttcaaattctgacagcacaactagtatgaaagaataaaactcttatacaatttaattgacgatgtaatcagtttgacatttgaggaaacacata 124  Q
    |||||||||||||||||||||||||||| |    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11842751 agttccttcaaattctgacagcacaactgg----aaagaataaaactcttatacaatttaattgacgatgtaatcagtttgacatttgaggaaacacata 11842846  T
Q  125 ctctagaagctaaagtggtagatatt--ctaaaggatcaactggaaagctaatatctagtttacttgattgcgattcatcttgtcatt------------ 210  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||                
T  11842847 ctctagaagctaaagtggtagatattgtctaaaggatcaactggaaagctaatatctagtttacttgactgcaattcatcttgacattccttttcatttt 11842946  T
Q  211 ------ccttatacaacttatgcagaaaccaggagtttcaattccaatagcaaggcaatttattacactcgaagcctattttaatttcttaaaattcagt 304  Q
          |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  11842947 gacattccttatacaacttatgcagaaaccaggagtttcaattccaatagcaagacaattcattacactcgaagcctattttaatttcttaaaattcagt 11843046  T
Q  305 gtgaacttaaccttaacttatgtgttctacactgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgaca 404  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11843047 gtgaacttaaccttaatttatgtgttctacactgttgtcaatagcggccgctaacagcgctatcgtggcgcggagcgaccaaaaccagtaaaacatgaca 11843146  T
Q  405 cagcgctccaaggcggagcgtttggagaaagcggctgaag--------cgggcgccattgcgggtataaagcttgctcgatcgggtcaaagcggacgctt 496  Q
    |||||||||||||||||||||||||||||||| |||||||        ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11843147 cagcgctccaaggcggagcgtttggagaaagcagctgaagcgggcagccgggcaccattgcgggtataaagcttgctcgatcgggtcaaagcggacgctt 11843246  T
Q  497 ttcacttaaaaccgtttttaggccatttttgtaattttcaaaacctaactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttctt 596  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11843247 ttcacttaaaaccgtttttaggccatttttgtaatttttaaaacctaactattactcttctccatcagaaccaaatacacagctgcaaacacaacttctt 11843346  T
Q  597 catcgtacaaac 608  Q
    ||||||||||||    
T  11843347 catcgtacaaac 11843358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 497 - 604
Target Start/End: Complemental strand, 3288595 - 3288486
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  3288595 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 3288496  T
Q  595 ttcatcgtac 604  Q
    ||||||||||    
T  3288495 ttcatcgtac 3288486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 368 - 456
Target Start/End: Complemental strand, 3288746 - 3288658
Alignment:
Q  368 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattg 456  Q
    |||||||||||||| |||||| ||  ||| |  ||||||| ||||||| ||   ||||||||||||||||| |||||||||||| ||||    
T  3288746 cgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgctccaacgctccgcgtttggagaaagcggatgaagcgggcgcaattg 3288658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 7e-51; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 113 - 303
Target Start/End: Original strand, 48431774 - 48431964
Alignment:
Q  113 aggaaacacatactctagaagctaaagtggtagatattctaaaggatcaactggaaagctaatatctagtttacttgattgcgattcatcttgtcattcc 212  Q
    |||||| ||||||||||||||||||| ||||||| ||||||||||||||  || |||||||||| |||||||||||| ||| ||||||| ||| ||||||    
T  48431774 aggaaagacatactctagaagctaaactggtagaaattctaaaggatcagttgaaaagctaataactagtttacttggttgtgattcattttgacattcc 48431873  T
Q  213 ttatacaacttatgcagaaaccaggagtttcaattccaatagcaaggcaatttattacactcgaagcctattttaatttcttaaaattcag 303  Q
    ||  |||| | ||||||||||| |||||| |||||||||| ||||| ||||| |||||||||||||||| |||||||||||| ||||||||    
T  48431874 tttaacaattcatgcagaaacctggagttccaattccaattgcaagacaattcattacactcgaagcctgttttaatttcttcaaattcag 48431964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 484 - 608
Target Start/End: Original strand, 48236161 - 48236288
Alignment:
Q  484 aaagcggacgcttttcacttaaaaccgtttttagg--ccatttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagct 580  Q
    ||||||| ||||||||||||||| ||||||| |||  |  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  48236161 aaagcgggcgcttttcacttaaacccgttttaagggtcattttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaatacacagcc 48236260  T
Q  581 gcaaacgcaacttcttcatcgtacaaac 608  Q
    |||||| ||||||||||||| |||||||    
T  48236261 gcaaacacaacttcttcatcatacaaac 48236288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 497 - 604
Target Start/End: Complemental strand, 41055587 - 41055478
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  41055587 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 41055488  T
Q  595 ttcatcgtac 604  Q
    ||||||||||    
T  41055487 ttcatcgtac 41055478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 497 - 604
Target Start/End: Original strand, 55682033 - 55682142
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  55682033 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 55682132  T
Q  595 ttcatcgtac 604  Q
    ||||||||||    
T  55682133 ttcatcgtac 55682142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 496 - 604
Target Start/End: Complemental strand, 375059 - 374949
Alignment:
Q  496 tttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaactt 593  Q
    ||||||||||||||||||| |||  || ||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||  ||||| ||||||    
T  375059 tttcacttaaaaccgttttaagggtcaattttgtaattttcaaaaccataactattactcttctctatcataaccaaatacacagcctcaaacacaactt 374960  T
Q  594 cttcatcgtac 604  Q
    |||||||||||    
T  374959 cttcatcgtac 374949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 497 - 604
Target Start/End: Original strand, 7199255 - 7199364
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||  ||||| |||||||    
T  7199255 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctcctccagaaccaaatacacagccacaaactcaacttc 7199354  T
Q  595 ttcatcgtac 604  Q
    ||||||||||    
T  7199355 ttcatcgtac 7199364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 497 - 600
Target Start/End: Complemental strand, 51470181 - 51470076
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  51470181 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 51470082  T
Q  595 ttcatc 600  Q
    ||||||    
T  51470081 ttcatc 51470076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 497 - 608
Target Start/End: Original strand, 49811683 - 49811796
Alignment:
Q  497 ttcacttaaaaccgtttttagg--ccatttttgtaattttcaaaacct-aactattactcttctccatcagaaccaaatacacagctgcaaacgcaactt 593  Q
    |||||||||||||||||| |||  |  ||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| |||||||  ||||||    
T  49811683 ttcacttaaaaccgttttaagggtcattttttgtaattttcaaaacgttaactat-actcttctccatcagaaccaaatacacaactgcaaaaacaactt 49811781  T
Q  594 cttcatcgtacaaac 608  Q
    |||||||||||||||    
T  49811782 cttcatcgtacaaac 49811796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 336 - 460
Target Start/End: Original strand, 7199062 - 7199186
Alignment:
Q  336 ctgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaag 435  Q
    |||||||||||||||||||    | |||| |||||||||||||||| |||||| ||  ||| |  ||||||| ||||||| |||||||||||||||||||    
T  7199062 ctgttgtcaatagcggccgaactcggcgcgatcgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgctccaacgcggagcgtttggagaaag 7199161  T
Q  436 cggctgaagcgggcgccattgcggg 460  Q
    ||| |||||||||||| ||||||||    
T  7199162 cggatgaagcgggcgcaattgcggg 7199186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 520 - 604
Target Start/End: Complemental strand, 37517550 - 37517466
Alignment:
Q  520 catttttgtaattttcaaaacctaactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 604  Q
    ||||||||||||||| ||| ||||||||||||||||||||| || | |||||||||||||  ||||| |||||||||||||||||    
T  37517550 catttttgtaattttaaaaccctaactattactcttctccaccatagccaaatacacagccacaaactcaacttcttcatcgtac 37517466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 520 - 604
Target Start/End: Complemental strand, 37521766 - 37521682
Alignment:
Q  520 catttttgtaattttcaaaacctaactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 604  Q
    ||||||||||||||| ||| ||||||||||||||||||||| || | |||||||||||||  ||||| |||||||||||||||||    
T  37521766 catttttgtaattttaaaaccctaactattactcttctccaccatagccaaatacacagccacaaactcaacttcttcatcgtac 37521682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 368 - 460
Target Start/End: Original strand, 20790102 - 20790194
Alignment:
Q  368 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 460  Q
    |||||||||||||| |||||| ||  ||| |  |||||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||    
T  20790102 cgcggcgcggagcggccaaaaacaacaaagcgcgacacagcgctctaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggg 20790194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 368 - 460
Target Start/End: Complemental strand, 37517725 - 37517633
Alignment:
Q  368 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 460  Q
    ||||||||||||||  ||||| ||| ||| |  ||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  37517725 cgcggcgcggagcggtcaaaaacagcaaagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggg 37517633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 368 - 460
Target Start/End: Complemental strand, 37521941 - 37521849
Alignment:
Q  368 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 460  Q
    ||||||||||||||  ||||| ||| ||| |  ||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  37521941 cgcggcgcggagcggtcaaaaacagcaaagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggg 37521849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 336 - 460
Target Start/End: Complemental strand, 51470374 - 51470250
Alignment:
Q  336 ctgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaag 435  Q
    |||||||||||||||||||      |||| |||||||||||||||| |||||| ||  ||| |  ||| |||||||||||  ||||||||||||||||||    
T  51470374 ctgttgtcaatagcggccgaacgaggcgcgatcgcggcgcggagcggccaaaaacaacaaagcgcgacgcagcgctccaacacggagcgtttggagaaag 51470275  T
Q  436 cggctgaagcgggcgccattgcggg 460  Q
    ||| |||||||||| | ||||||||    
T  51470274 cggatgaagcgggcacaattgcggg 51470250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 11944922 - 11944973
Alignment:
Q  336 ctgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaa 387  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  11944922 ctgttgtcaatagcggccgctaccggcgctatcgcggcgcggagcgaccaaa 11944973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 459
Target Start/End: Original strand, 55681905 - 55681963
Alignment:
Q  401 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgg 459  Q
    ||||||| ||||||| |||||||||||||||||||||| ||||||||| || |||||||    
T  55681905 gacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggtgcaattgcgg 55681963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 383 - 451
Target Start/End: Complemental strand, 375183 - 375115
Alignment:
Q  383 ccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgc 451  Q
    |||||| ||| |||||  ||| || |||||||| ||||||||||||| |||||||||||||||||||||    
T  375183 ccaaaaacagcaaaacgcgacgcaacgctccaacgcggagcgtttggcgaaagcggctgaagcgggcgc 375115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 401 - 448
Target Start/End: Original strand, 42491054 - 42491101
Alignment:
Q  401 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcggg 448  Q
    ||||||| ||||||| |||||||||||||||||||||| |||||||||    
T  42491054 gacacagtgctccaacgcggagcgtttggagaaagcggatgaagcggg 42491101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 2e-45; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 92 - 276
Target Start/End: Complemental strand, 23707358 - 23707176
Alignment:
Q  92 atgtaatcagtttgacatttgaggaaacacatactctagaagctaaagtggtagatattctaaaggatcaactggaaagctaatatctagtttacttgat 191  Q
    |||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||    |||| ||||||||||||| |||||||||||||     
T  23707358 atgtaagcaatttgacgtttgaggaaacacatactctagaagctaaagtggtagatattctaatt--tcaattggaaagctaataactagtttacttgac 23707261  T
Q  192 tgcgattcatcttgtcattccttatacaacttatgcagaaaccaggagtttcaattccaatagcaaggcaatttattacactcga 276  Q
    || ||||||| |||  |||||||| |||| ||||||||||||| |||||||||||| |||| |||||  |||| |||||||||||    
T  23707260 tgtgattcattttgaaattccttaaacaatttatgcagaaacctggagtttcaatttcaattgcaagagaattcattacactcga 23707176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 497 - 604
Target Start/End: Complemental strand, 42872710 - 42872601
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    ||||||||||||| |||| |||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  42872710 ttcacttaaaaccattttaagggtcttttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaatacacagccgcaaacacaacttc 42872611  T
Q  595 ttcatcgtac 604  Q
    ||||||||||    
T  42872610 ttcatcgtac 42872601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 497 - 604
Target Start/End: Complemental strand, 52004947 - 52004838
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  52004947 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 52004848  T
Q  595 ttcatcgtac 604  Q
    ||||||||||    
T  52004847 ttcatcgtac 52004838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 497 - 604
Target Start/End: Original strand, 52539329 - 52539438
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  52539329 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 52539428  T
Q  595 ttcatcgtac 604  Q
    ||||||||||    
T  52539429 ttcatcgtac 52539438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 366 - 468
Target Start/End: Complemental strand, 42872874 - 42872772
Alignment:
Q  366 atcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataa 465  Q
    |||||||||||||||| |||||| ||| |||||  ||| ||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||    
T  42872874 atcgcggcgcggagcggccaaaaacagaaaaacgcgacgcagcgctccaacgcggagcgtttggagaaagcggctgaagcgggtgcaattacgggtataa 42872775  T
Q  466 agc 468  Q
    |||    
T  42872774 agc 42872772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 497 - 604
Target Start/End: Complemental strand, 20010833 - 20010724
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||  ||||| |||||||    
T  20010833 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagagccaaatacacagccacaaactcaacttc 20010734  T
Q  595 ttcatcgtac 604  Q
    ||||||||||    
T  20010733 ttcatcgtac 20010724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 260 - 335
Target Start/End: Original strand, 23619277 - 23619352
Alignment:
Q  260 caatttattacactcgaagcctattttaatttcttaaaattcagtgtgaacttaaccttaacttatgtgttctaca 335  Q
    ||||| ||||||||||||| || |||||||||||| |||||||| | |||||||||||||||||||||||||||||    
T  23619277 caattcattacactcgaagtctgttttaatttcttcaaattcagcgcgaacttaaccttaacttatgtgttctaca 23619352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 260 - 335
Target Start/End: Original strand, 23650622 - 23650697
Alignment:
Q  260 caatttattacactcgaagcctattttaatttcttaaaattcagtgtgaacttaaccttaacttatgtgttctaca 335  Q
    ||||| ||||||||||||| || |||||||||||| |||||||| | |||||||||||||||||||||||||||||    
T  23650622 caattcattacactcgaagtctgttttaatttcttcaaattcagcgcgaacttaaccttaacttatgtgttctaca 23650697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 260 - 335
Target Start/End: Original strand, 23736058 - 23736133
Alignment:
Q  260 caatttattacactcgaagcctattttaatttcttaaaattcagtgtgaacttaaccttaacttatgtgttctaca 335  Q
    ||||| ||||||||||||| || |||||||||||| | |||||| | |||||||||||||||||||||||||||||    
T  23736058 caattcattacactcgaagtctgttttaatttcttcacattcagcgcgaacttaaccttaacttatgtgttctaca 23736133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 368 - 498
Target Start/End: Complemental strand, 52005108 - 52004978
Alignment:
Q  368 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaag 467  Q
    |||||||||||||| |||||| ||  | | |  ||||||| ||||||| |||||||||||||||||||||| ||||||||| || |||||||| | ||||    
T  52005108 cgcggcgcggagcggccaaaaacaacacagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggtgcaattgcgggca-aaag 52005010  T
Q  468 cttgctcgat-cgggtcaaagcggacgctttt 498  Q
    |  || |||| ||||||||||||| |||||||    
T  52005009 cgggcgcgatgcgggtcaaagcgggcgctttt 52004978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 368 - 451
Target Start/End: Original strand, 52539190 - 52539273
Alignment:
Q  368 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgc 451  Q
    |||||||||||||| |||||| ||  ||| |  ||| ||||||| ||| |||||||||||||||||||||| |||| |||||||    
T  52539190 cgcggcgcggagcggccaaaaacaacaaagcgcgacgcagcgctgcaacgcggagcgtttggagaaagcggatgaaacgggcgc 52539273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 336 - 438
Target Start/End: Original strand, 14620673 - 14620775
Alignment:
Q  336 ctgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaag 435  Q
    |||||||||||||||||||||| | ||||||| ||||||||||| | |||||||    ||||    |  ||||||| ||| |||||||||||||||||||    
T  14620673 ctgttgtcaatagcggccgctaccggcgctattgcggcgcggagtggccaaaactgacaaaaagcaatgcagcgctacaaagcggagcgtttggagaaag 14620772  T
Q  436 cgg 438  Q
    |||    
T  14620773 cgg 14620775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 405 - 447
Target Start/End: Complemental strand, 52789552 - 52789510
Alignment:
Q  405 cagcgctccaaggcggagcgtttggagaaagcggctgaagcgg 447  Q
    ||||||| |||||||||||||||||||||||||| ||||||||    
T  52789552 cagcgctacaaggcggagcgtttggagaaagcgggtgaagcgg 52789510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 405 - 448
Target Start/End: Original strand, 36392452 - 36392495
Alignment:
Q  405 cagcgctccaaggcggagcgtttggagaaagcggctgaagcggg 448  Q
    ||||||||||||||||| | |||||||||||||| |||||||||    
T  36392452 cagcgctccaaggcggaacatttggagaaagcgggtgaagcggg 36392495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 9e-38; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 497 - 608
Target Start/End: Original strand, 48826802 - 48826914
Alignment:
Q  497 ttcacttaaaaccgtttttaggccatttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttct 595  Q
    |||||||||||||||||| | | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  ||||||||    
T  48826802 ttcacttaaaaccgttttaaagtcatttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaatacacagccgcaaatacaacttct 48826901  T
Q  596 tcatcgtacaaac 608  Q
    |||||||||||||    
T  48826902 tcatcgtacaaac 48826914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 497 - 604
Target Start/End: Complemental strand, 33516533 - 33516424
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    |||| ||||||||||||| |||  |||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  33516533 ttcatttaaaaccgttttaagggtcattttggtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 33516434  T
Q  595 ttcatcgtac 604  Q
    ||||||||||    
T  33516433 ttcatcgtac 33516424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 520 - 604
Target Start/End: Original strand, 43613833 - 43613918
Alignment:
Q  520 catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 604  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||||||    
T  43613833 catttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcatcgtac 43613918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 502 - 600
Target Start/End: Complemental strand, 46067301 - 46067201
Alignment:
Q  502 ttaaaaccgtttttag-gccatttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcat 599  Q
    ||||||||||||| || | |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||||    
T  46067301 ttaaaaccgttttaagtgtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcat 46067202  T
Q  600 c 600  Q
    |    
T  46067201 c 46067201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 336 - 461
Target Start/End: Original strand, 48826631 - 48826755
Alignment:
Q  336 ctgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaag 435  Q
    |||||||||||||||||||||| | ||| |   |||||| |||||| |||||| ||||| |||   |  || ||||||||||||||||||||||||||||    
T  48826631 ctgttgtcaatagcggccgctaccggcg-tggagcggcgtggagcggccaaaaacagtagaacgcaatgcaacgctccaaggcggagcgtttggagaaag 48826729  T
Q  436 cggctgaagcgggcgccattgcgggt 461  Q
    |||||||||||||||| |||||||||    
T  48826730 cggctgaagcgggcgcaattgcgggt 48826755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 336 - 460
Target Start/End: Original strand, 11591285 - 11591409
Alignment:
Q  336 ctgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaag 435  Q
    ||||||||||||||||| |    | |||| |||||||||||||||| |||||| ||  ||| |  ||||||| ||| ||| |||||||||||||||||||    
T  11591285 ctgttgtcaatagcggcggaacgccgcgcgatcgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgcttcaacgcggagcgtttggagaaag 11591384  T
Q  436 cggctgaagcgggcgccattgcggg 460  Q
    ||| |||||||||||| ||||||||    
T  11591385 cggatgaagcgggcgcaattgcggg 11591409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 497 - 602
Target Start/End: Original strand, 11591464 - 11591570
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    |||| ||||||||||||| |||  ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||  || || |||||||    
T  11591464 ttcatttaaaaccgttttaagggtcatttttgtaatttttaaaaccctaactattactcttctcca-cagaaccaaatacacagccacagactcaacttc 11591562  T
Q  595 ttcatcgt 602  Q
    ||| ||||    
T  11591563 ttcttcgt 11591570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 369 - 460
Target Start/End: Complemental strand, 33516682 - 33516591
Alignment:
Q  369 gcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 460  Q
    ||||||||||||| |||||| ||  ||| |  ||||||| ||| ||| |||||||||||||||||||||| |||||| ||||| ||||||||    
T  33516682 gcggcgcggagcggccaaaaacaacaaagcgcgacacagtgcttcaacgcggagcgtttggagaaagcggatgaagcaggcgcaattgcggg 33516591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 9e-38; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 371 - 514
Target Start/End: Original strand, 21472702 - 21472845
Alignment:
Q  371 ggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagctt 470  Q
    ||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||      
T  21472702 ggcgcggagcggccaaaaccagtaaaacgtgacgcagcgctccaaggcggagcgtttggagaaagcggctgaagcggtcgcgattgcgggtatcaagcgg 21472801  T
Q  471 gctcgat-cgggtcaaagcggacgcttttcacttaaaaccgtttt 514  Q
    || |||| | |||| ||||||||||||||| ||||||||| ||||    
T  21472802 gcgcgatgctggtc-aagcggacgcttttcccttaaaaccatttt 21472845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 497 - 603
Target Start/End: Complemental strand, 33458469 - 33458361
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  33458469 ttcatttaaaaccgttttgagggtcatttttgtaattttcaaaaccctgactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 33458370  T
Q  595 ttcatcgta 603  Q
    |||||||||    
T  33458369 ttcatcgta 33458361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 401 - 498
Target Start/End: Complemental strand, 33458597 - 33458500
Alignment:
Q  401 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgat-cgggtcaaagcggacgctttt 498  Q
    |||||||||||| || |||||||||||||||||||||| |||||||||||| |||||||| | |||||  || |||| ||||||||||||| |||||||    
T  33458597 gacacagcgctctaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggcgcgatgcgggtcaaagcgggcgctttt 33458500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 497 - 600
Target Start/End: Complemental strand, 34479049 - 34478944
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| || |||||||||||||||| | ||| |||||||||| |  ||||| |||||||    
T  34479049 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctacctattactcttctccaccggaatcaaatacacatccacaaactcaacttc 34478950  T
Q  595 ttcatc 600  Q
    ||||||    
T  34478949 ttcatc 34478944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 337 - 438
Target Start/End: Original strand, 17903658 - 17903759
Alignment:
Q  337 tgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagc 436  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||  ||||||     |||||| ||| || |||| ||||| ||||||||||||||||||    
T  17903658 tgttgtcaatagcggccgctaccagcgctatcacggtgcggagcagccaaaaaacacaaaacacgacgcaacgctacaaggtggagcgtttggagaaagc 17903757  T
Q  437 gg 438  Q
    ||    
T  17903758 gg 17903759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 460
Target Start/End: Complemental strand, 34479169 - 34479118
Alignment:
Q  409 gctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 460  Q
    ||||||| |||||||||||||||||||||| |||||| | ||| ||||||||    
T  34479169 gctccaacgcggagcgtttggagaaagcggatgaagcagacgcaattgcggg 34479118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 522 - 604
Target Start/End: Original strand, 7905 - 7988
Alignment:
Q  522 tttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 604  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  7905 tttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaatacacagccgcaaacacaacttcttcatcgtac 7988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 366 - 468
Target Start/End: Original strand, 7715 - 7817
Alignment:
Q  366 atcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataa 465  Q
    |||||||||||||||| |||||| ||| |||||  ||| ||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||    
T  7715 atcgcggcgcggagcggccaaaaacagaaaaacgcgacgcagcgctccaacgcggagcgtttggagaaagcggctgaagcgggtgcaattacgggtataa 7814  T
Q  466 agc 468  Q
    |||    
T  7815 agc 7817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 497 - 604
Target Start/End: Original strand, 18740 - 18849
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  18740 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 18839  T
Q  595 ttcatcgtac 604  Q
    ||||||||||    
T  18840 ttcatcgtac 18849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 336 - 460
Target Start/End: Original strand, 18547 - 18671
Alignment:
Q  336 ctgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaag 435  Q
    |||||||||||||||||||    | |||| |||||||||||||||| | |||| ||  ||| |  ||| ||||||||||| ||||||| |||||||||||    
T  18547 ctgttgtcaatagcggccgaacgcggcgcgatcgcggcgcggagcggctaaaaacaacaaagcgcgacgcagcgctccaacgcggagcatttggagaaag 18646  T
Q  436 cggctgaagcgggcgccattgcggg 460  Q
    ||| |||||||||||| ||||||||    
T  18647 cggatgaagcgggcgcaattgcggg 18671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0699 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0699
Description:

Target: scaffold0699; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 520 - 604
Target Start/End: Complemental strand, 108 - 23
Alignment:
Q  520 catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 604  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||||||    
T  108 catttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcatcgtac 23  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 497 - 604
Target Start/End: Original strand, 38566624 - 38566733
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  38566624 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 38566723  T
Q  595 ttcatcgtac 604  Q
    |||| |||||    
T  38566724 ttcaccgtac 38566733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 368 - 498
Target Start/End: Original strand, 38566463 - 38566593
Alignment:
Q  368 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaag 467  Q
    |||||||||||||| |||||| ||  ||| |  |||||||  |||||| |||||||||||||||||||||| |||||||||||| |||||||| | ||||    
T  38566463 cgcggcgcggagcggccaaaaacaacaaagcgcgacacagttctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaag 38566561  T
Q  468 cttgctcgat-cgggtcaaagcggacgctttt 498  Q
    |  || |||| ||||||||||||| |||||||    
T  38566562 cgggcgcgatgcgggtcaaagcgggcgctttt 38566593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 23728737 - 23728686
Alignment:
Q  336 ctgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaa 387  Q
    |||||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  23728737 ctgttgtcaatagcggccgctaccggcgctatcgcggcgcggagcggccaaa 23728686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 520 - 604
Target Start/End: Complemental strand, 37369724 - 37369639
Alignment:
Q  520 catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 604  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||||||    
T  37369724 catttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcatcgtac 37369639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 497 - 600
Target Start/End: Original strand, 41992333 - 41992438
Alignment:
Q  497 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 594  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||  ||||| |||||||    
T  41992333 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccataaccaaatacacagccacaaactcaacttc 41992432  T
Q  595 ttcatc 600  Q
    ||||||    
T  41992433 ttcatc 41992438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 368 - 498
Target Start/End: Complemental strand, 37369909 - 37369779
Alignment:
Q  368 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaag 467  Q
    |||||||||||||| |||||| ||  ||| |  ||||||| ||||||| |||||||||||||||||||||| |||||||||||| |||||||| | ||||    
T  37369909 cgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaag 37369811  T
Q  468 cttgctcgat-cgggtcaaagcggacgctttt 498  Q
    |  || |||| ||||||||||||| |||||||    
T  37369810 cgggcgcgatgcgggtcaaagcgggcgctttt 37369779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 368 - 451
Target Start/End: Original strand, 41992194 - 41992277
Alignment:
Q  368 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgc 451  Q
    |||||||||||||| |||||| ||  ||| |  ||||||||||||||| |||||| ||||||||||||||| ||||||||||||    
T  41992194 cgcggcgcggagcggccaaaaacaacaaagcgcgacacagcgctccaacgcggagtgtttggagaaagcggatgaagcgggcgc 41992277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 8595030 - 8595080
Alignment:
Q  337 tgttgtcaatagcggccgctaacagcgctatcgcggcgcggagcgaccaaa 387  Q
    |||||||||||| |||||||| |||||||||||||||| |||||| |||||    
T  8595030 tgttgtcaatagaggccgctaccagcgctatcgcggcgtggagcggccaaa 8595080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 368 - 438
Target Start/End: Complemental strand, 41020544 - 41020474
Alignment:
Q  368 cgcggcgcggagcgaccaaaaccagtaaaacatgacacagcgctccaaggcggagcgtttggagaaagcgg 438  Q
    |||||||||||||| |||||| ||  ||| |  ||||||| |||| || ||||||||||||||||||||||    
T  41020544 cgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgctctaacgcggagcgtttggagaaagcgg 41020474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University