View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18633_low_10 (Length: 425)
Name: NF18633_low_10
Description: NF18633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18633_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 6946137 - 6945745
Alignment:
| Q |
16 |
caacaccaaagatccaaccaagagcctttccaaaattgtaacatctctacaactcctatcaagccagagaaaaggcaccatgaactacatcccagaagat |
115 |
Q |
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| T |
6946137 |
caacaccaaagatccaaccaagagccttttcaaaattgtaacatctctacaactcctatcaagccagagaaaaggcaccatgaactacatcccagaagat |
6946038 |
T |
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| Q |
116 |
tgaccaacaatcaactatttcaccaaaggattaaactccacagatcacctgacccaccaaacctcacaatgcaaaggaaaaacagttaaccgttagcgaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6946037 |
tgaccaacaatcaactatttcaccaaaggattaaactccacagatcacctgacccaccaaacctcacaatgcaaaggaaaaacagttaactgttagcgaa |
6945938 |
T |
|
| Q |
216 |
tcaaaagacaaaataccccaatctgctgccattaaagaaaactaaaatgagacctccaagacaactaatacagaaacagtgagacaaaacaccaatgcat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6945937 |
tcaaaagacaaaataccccaatctgctgccattaaagaaaactaaaatgagacctccaagacaactaatacagaaacagtgagacaaaacaccaatgcat |
6945838 |
T |
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| Q |
316 |
caatctggtctgaaacttcaggtcactatatcgcccatacacaccgtcggattcacacaccattgattaatgttgtaacctgtgctctttgat |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6945837 |
caatctggtctgaaacttcaggtcactatatcgcccatacacaccctcggattcacacaccattgattaatgttgtaacctgtgctctttgat |
6945745 |
T |
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